Factsheet for TraesCS3D01G004500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G488000.1
TraesCS2B01G515600.1
TraesCS2D01G488300.1
TraesCS5A01G196000.2
TraesCS5B01G187400.1
TraesCS5D01G195000.1
TraesCS6A01G166700.1
TraesCS6A01G166800.1
TraesCS6A01G166900.1
TraesCS6A01G173700.1
TraesCS6B01G194200.1
TraesCS6B01G194300.1
TraesCS6B01G201600.1
TraesCS6D01G155200.1
TraesCS6D01G155300.1
TraesCS6D01G155400.1
TraesCS6D01G162800.1
TraesCS7A01G402300.1
TraesCS7B01G302400.1
TraesCS7D01G396100.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	TraesCS5A01G196000.2	AT4G29510.1	21798944
AT1G26110.1	TraesCS5B01G187400.1	AT4G29510.1	21798944
AT1G26110.1	TraesCS5D01G195000.1	AT4G29510.1	21798944
AT1G26110.1	TraesCS6A01G173700.1	AT4G34230.1	21798944
AT1G26110.1	TraesCS6B01G201600.1	AT4G34230.1	21798944
AT1G26110.1	TraesCS6D01G162800.1	AT4G34230.1	21798944
AT1G26110.1	TraesCS2A01G488000.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS2B01G515600.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS2D01G488300.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6A01G166700.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6A01G166800.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6A01G166900.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6B01G194200.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6B01G194300.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6D01G155200.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6D01G155300.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS6D01G155400.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS7A01G402300.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS7B01G302400.1	AT5G06770.1	21798944
AT1G26110.1	TraesCS7D01G396100.2	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G006100.1	Wheat	nucleus	90.51	90.65
HORVU3Hr1G000880.1	Barley	nucleus	82.83	83.33
Zm00001d051566_P001	Maize	nucleus	9.64	71.11
VIT_02s0087g00680.t01	Wine grape	cytosol	8.58	67.86
Os01t0111200-01	Rice	nucleus	62.5	66.94
EES02617	Sorghum	nucleus, plastid	61.6	61.78
KRG93865	Soybean	cytosol	4.82	61.54
Zm00001d008439_P001	Maize	plasma membrane	59.34	60.71
Zm00001d040142_P001	Maize	nucleus, plastid	57.53	59.04
GSMUA_Achr1P20740_001	Banana	nucleus	46.08	51.95
GSMUA_Achr2P07060_001	Banana	nucleus	43.52	48.74
Solyc08g075300.2.1	Tomato	nucleus, plastid	22.59	47.32
VIT_01s0011g02820.t01	Wine grape	nucleus	43.37	46.75
GSMUA_Achr9P00760_001	Banana	nucleus	42.17	46.59
Zm00001d027310_P001	Maize	nucleus, plastid	21.69	46.15
KRH75529	Soybean	nucleus	41.72	45.34
PGSC0003DMT400002103	Potato	nucleus	40.51	44.98
KRH70630	Soybean	nucleus	41.42	44.35
KRH70633	Soybean	nucleus	40.81	43.99
CDY20530	Canola	nucleus	39.76	43.85
Bra011009.1-P	Field mustard	nucleus	39.31	43.72
Solyc05g009980.2.1	Tomato	nucleus	39.31	43.57
KRH62823	Soybean	nucleus	40.66	43.55
CDY36091	Canola	nucleus	39.01	43.38
AT1G26110.1	Thale cress	nucleus	39.76	43.21
CDY55955	Canola	nucleus	38.7	43.12
CDY51127	Canola	nucleus	37.05	42.05
CDY70855	Canola	plastid	12.2	32.53
KRH76455	Soybean	nucleus	26.36	31.03
Bra027601.1-P	Field mustard	nucleus, plastid	25.0	29.96
Solyc03g119850.1.1	Tomato	mitochondrion	19.28	29.49
VIT_02s0087g00650.t01	Wine grape	cytosol	22.59	29.3
CDY68331	Canola	nucleus, plastid	23.04	29.25
CDX87795	Canola	nucleus	22.59	29.18
AT5G45330.1	Thale cress	nucleus, plastid	25.0	29.07
Bra021964.1-P	Field mustard	nucleus, plastid	22.89	28.46
PGSC0003DMT400010431	Potato	nucleus	27.71	26.67
KRH39773	Soybean	endoplasmic reticulum	23.64	26.66
Solyc06g069280.2.1	Tomato	nucleus	26.81	25.61
CDY13062	Canola	nucleus, plastid	15.96	25.36

Protein Annotations

EnsemblPlants:TraesCS3D01G004500.1	EnsemblPlantsGene:TraesCS3D01G004500	Gene3D:2.30.30.100	InterPro:DFDF	InterPro:FDF_dom	InterPro:IPR025762
InterPro:IPR025768	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N	InterPro:TFG_box	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10
PFAM:PF09532	PFAM:PF12701	PFscan:PS51512	PFscan:PS51536	SEG:seg	SMART:SM01199
SMART:SM01271	SUPFAM:SSF50182	TIGR:cd01736	MapMan:16.8.2.2.3	:	:

Description

No Description!

Coordinates

chr3D:-:1766184..1771755

Molecular Weight (calculated)

69114.0 Da

IEP (calculated)

8.465

GRAVY (calculated)

-0.718

Length

664 amino acids

Sequence
(BLAST)

001: MAAEAPPPQP PSSXXXXSAA APARQAAAAG AASPETYLGS LISLTSKSEI RYEGVLYNIN TEESSIGLRN VRSFGTEGRK KDGIQIPASD KVYEYILFRG
101: SDIKDLQVKS SPPPPQPQPA PLHNDPAIIQ SHYPQPASTA SSLQSAAGAA LPHLSSQPAQ YGFQRPNFPS NIPLYQPGNN PWGSSGQAPA GNASALSVPP
201: MYWQGYYTPP GGLPSHLQQP TMLQPTPGLS APQTFQYPGL NPSLPSGPPL LQPSATAQGP SSSATPATTA PSASLLGPET SKPLLPNIVP LFTPPVPSHG
301: ASLPVASQPI SMTETSATAS QSLNSLVSSK TPAVNPGSTL SHQTASQAIS LSIASSSLAG LEIPAPLLAS SGQLLQNAPS MLSSSQSMQT PLQMSNNIAK
401: PADPKTKVAE PLLPDPPARA ENNEPILPLP KQTPQRHNGA GSQGHHNYRG RGRGRGSALS QASTKFTEEF DFMAMNEKFN KDEVWGHLGR KSQSRDKDGE
501: QGDDVFDEDL EYEETDNPEL DVKPVYVKDD FFDSLSGGTF GRGGQNGRPR FSELRKMDTE TFGEFPRHRQ PYRGGGRGGY RGGGGRSRGS YYGGRGDYGN
601: MGRGGGQENY YGGGRGGHGN MGRGGGGGQD NYYGGGSGRG GYGRGGGQED SYPQRGGGGS YGRG

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.