CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027601.1-P	Field mustard	nucleus, plastid	66.67	29.96
AT5G45330.1	Thale cress	nucleus, plastid	57.03	24.87
Solyc08g075300.2.1	Tomato	nucleus, plastid	30.52	23.97
CDX87795	Canola	nucleus	46.99	22.76
CDY68331	Canola	nucleus, plastid	47.39	22.56
KRH76455	Soybean	nucleus	34.14	15.07
CDY51127	Canola	nucleus	31.73	13.5
GSMUA_Achr1P20740_001	Banana	nucleus	31.73	13.41
GSMUA_Achr2P07060_001	Banana	nucleus	30.92	12.98
GSMUA_Achr9P00760_001	Banana	nucleus	31.33	12.98
CDY20530	Canola	nucleus	31.33	12.96
CDY36091	Canola	nucleus	30.92	12.9
Os01t0111200-01	Rice	nucleus	31.73	12.74
KRH39773	Soybean	endoplasmic reticulum	30.12	12.73
TraesCS3A01G006100.1	Wheat	nucleus	33.73	12.67
CDY55955	Canola	nucleus	30.12	12.58
TraesCS3D01G004500.1	Wheat	plastid	32.53	12.2
HORVU3Hr1G000880.1	Barley	nucleus	31.73	11.97
EES02617	Sorghum	nucleus, plastid	30.52	11.48
Zm00001d040142_P001	Maize	nucleus, plastid	29.32	11.28
Zm00001d008439_P001	Maize	plasma membrane	29.32	11.25
Zm00001d051566_P001	Maize	nucleus	4.02	11.11
VIT_02s0087g00680.t01	Wine grape	cytosol	2.01	5.95
CDY13062	Canola	nucleus, plastid	8.03	4.78
Zm00001d027310_P001	Maize	nucleus, plastid	4.42	3.53

Protein Annotations

EnsemblPlants:CDY70855	EnsemblPlantsGene:GSBRNA2T00007938001	InterPro:DFDF	InterPro:FDF_dom	InterPro:FFD_box	InterPro:IPR025761
InterPro:IPR025762	PANTHER:PTHR13586	PANTHER:PTHR13586:SF3	PFAM:PF09532	PFscan:PS51512	PFscan:PS51513
ProteinID:CDY70855	ProteinID:CDY70855.1	SEG:seg	SMART:SM01199	UniParc:UPI0004EE4A4D	UniProt:A0A078JWS6
MapMan:35.1	:	:	:	:	:

Description

BnaCnng70060DBnaCnng70060D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JWS6]

Coordinates

chrLK043523:+:61..2044

Molecular Weight (calculated)

27864.0 Da

IEP (calculated)

6.725

GRAVY (calculated)

-0.878

Length

249 amino acids

Sequence
(BLAST)

001: AVGNGVYDSL SNHHNRSIPY NIPAMTSHSA PVVPGPFSNS PVSFSDMKPL LQSRQMVNRG QEMFVATNPV SVGVPSRSLA TTYQEPLLPL AATAHQSRIP
101: SSRNEFTEEF DFEAMNEKFN KSELWGFLGK NNHREETVVE PTEEGKAKPA YNKDDFFDTI SCNPLDRVAR SGQQQLDSQF PEHMRQNSEA YGNHFQMPLQ
201: PQPGQGAYLA AQTNYRGGYD NNNYSNNYYS NSGYGYYSGG RGRGRNTHF

Best Arabidopsis Sequence Match ( AT5G45330.2 )
(BLAST)

001: MRVRSCGTEG RKKDGPQIPP CDKVYDYILF RGSDIKDLQV NPSPSAQSRQ EIQSEQDVNQ SPHSRPAMTM SSPISGYDSG YGLGRGSQWI NTPALSSKPV
101: PVTQHSSVPL SFQPPSANAG SLTESPVSLI DSTQSNAGSS MPIPSFVQGN KFASSGVPLG MMQKPVSSSS TIPNGPQIID YFSSPIMGLV DDSSQVVTRS
201: PDVSSNQSYS SNPSPLGQTQ LHTPPGLASV SSNLSPPSEA QLSAPNIQKI YPSAPQAIGK VVYDPQSNHP HRSIPHELPA VASNSAPVIP GPLSKSPESF
301: FDMDPSLQSR QQMVYRGQEM FAATNPASAN VPSQSFAPRN HAPLLPLPVS AHQSRIPSSS IEYTEEFDFE AMNEKFKKSE LWGYLGRNNQ RNQNDYGEET
401: AIEPNAEGKP AYNKDDFFDT ISCNQLDRVA RSGQQHNQFP EHMRQVPEAF GNNFQRPPPL QPGQGAYLAA QTNYRGGYHN NNNNNYYSNS GYGYYSGGRG
501: RGRNTHF

Arabidopsis Description

DCP5-LDecapping 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9FH77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.