Factsheet for Bra027601.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0087g00680.t01	Wine grape	cytosol	10.47	69.05
CDY70855	Canola	plastid	29.96	66.67
AT5G45330.1	Thale cress	nucleus, plastid	54.33	52.71
Bra021964.1-P	Field mustard	nucleus, plastid	44.04	45.69
Zm00001d051566_P001	Maize	nucleus	7.4	45.56
Solyc08g075300.2.1	Tomato	nucleus, plastid	25.63	44.8
KRH76455	Soybean	nucleus	28.52	28.01
GSMUA_Achr1P20740_001	Banana	nucleus	29.6	27.84
Os01t0111200-01	Rice	nucleus	30.87	27.58
GSMUA_Achr2P07060_001	Banana	nucleus	29.24	27.32
Bra011009.1-P	Field mustard	nucleus	28.52	26.47
GSMUA_Achr9P00760_001	Banana	nucleus	28.34	26.12
HORVU3Hr1G000880.1	Barley	nucleus	30.32	25.45
TraesCS3A01G006100.1	Wheat	nucleus	30.14	25.19
TraesCS3D01G004500.1	Wheat	plastid	29.96	25.0
Zm00001d040142_P001	Maize	nucleus, plastid	28.7	24.57
Zm00001d008439_P001	Maize	plasma membrane	28.7	24.5
EES02617	Sorghum	nucleus, plastid	29.24	24.47
KRH39773	Soybean	endoplasmic reticulum	25.09	23.6
Zm00001d027310_P001	Maize	nucleus, plastid	12.09	21.47

Protein Annotations

Gene3D:2.30.30.100	MapMan:35.1	EnsemblPlantsGene:Bra027601	EnsemblPlants:Bra027601.1	EnsemblPlants:Bra027601.1-P	InterPro:DFDF
InterPro:FDF_dom	InterPro:FFD_box	InterPro:IPR025761	InterPro:IPR025762	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N
UniProt:M4EFN9	PFAM:PF09532	PFAM:PF12701	PFscan:PS51512	PFscan:PS51513	PANTHER:PTHR13586
PANTHER:PTHR13586:SF3	SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182	UniParc:UPI0002542676	SEG:seg

Description

AT5G45330 (E=8e-190) | unknown protein

Coordinates

chrA09:+:12966003..12968555

Molecular Weight (calculated)

59780.1 Da

IEP (calculated)

6.457

GRAVY (calculated)

-0.678

Length

554 amino acids

Sequence
(BLAST)

001: MASESSQSAS PSPSPSPSMG DTFVGSFISL VSNSEIRYEG ILYHLNVNDS TLGLKNVRSC GTEGRKKDGT QVPPSDTVYD YILFRGSDIK DLQVNPSPSP
101: QPRHQIQREH DVNQSSLARP TMSSPPSGYD SGYGLGRGAQ WVQTPALSSK PVPATHHSPV PLGFQPPPSN AGTESPASLI GSANSFQAAQ SNAGLSMPMP
201: SFVQGNKLPS TGVPPGMMGQ AVSSSATKHN DPQIIDMSAS PVMGLVDDAS QVVTRTPDVA SDQAYSSPLG QAQRHTPPGL ASSPLSEAQL SGPYIQNGYP
301: IAPQAVGNGV YDSLSNHHNR SIPYNIPAMT SHSAPVVPGP FSNSPQSFSD MKPLLQSRQM INRGQEMFVA TNPVSVGVPS RSLATTYQEP LLPLAATAHQ
401: SRIPSSRNEF TEEFDFEAMN EKFNKSELWG FLGKNNHREE TVVEPTEEGK AKPAYNKDDF FDTISCNPLD RVARSGQQQL DSQFPEHMRQ NPEAYGNHFQ
501: MPLQPQPGQG AYLAAQTNYR GGYDNNNNYS NNYYSNSGYG YYSGGRGRGR NTHF

Best Arabidopsis Sequence Match ( AT5G45330.1 )
(BLAST)

001: MASESSQSSS PSSSQPPSSV PSPSPGNNVG DTFIGSFISL ISKYEIRYEG ILYHLNVQDS TLGLKNVRSC GTEGRKKDGP QIPPCDKVYD YILFRGSDIK
101: DLQVNPSPSA QSRQEIQSEQ DVNQSPHSRP AMTMSSPISG YDSGYGLGRG SQWINTPALS SKPVPVTQHS SVPLSFQPPS ANAGSLTESP VSLIDSTQSN
201: AGSSMPIPSF VQGNKFASSG VPLGMMQKPV SSSSTIPNGP QIIDYFSSPI MGLVDDSSQV VTRSPDVSSN QSYSSNPSPL GQTQLHTPPG LASVSSNLSP
301: PSEAQLSAPN IQKIYPSAPQ AIGKVVYDPQ SNHPHRSIPH ELPAVASNSA PVIPGPLSKS PESFFDMDPS LQSRQQMVYR GQEMFAATNP ASANVPSQSF
401: APRNHAPLLP LPVSAHQSRI PSSSIEYTEE FDFEAMNEKF KKSELWGYLG RNNQRNQNDY GEETAIEPNA EGKPAYNKDD FFDTISCNQL DRVARSGQQH
501: NQFPEHMRQV PEAFGNNFQR PPPLQPGQGA YLAAQTNYRG GYHNNNNNNY YSNSGYGYYS GGRGRGRNTH F

Arabidopsis Description

DCP5-LDecapping 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9FH77]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.