Factsheet for Bra011009.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010325.1-P
Bra011118.1-P
Bra011510.1-P
Bra017639.1-P
Bra024143.1-P
Bra028719.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	Bra010325.1-P	AT4G29510.1	21798944
AT1G26110.1	Bra011118.1-P	AT4G29510.1	21798944
AT1G26110.1	Bra024143.1-P	AT4G29510.1	21798944
AT1G26110.1	Bra011510.1-P	AT4G34230.1	21798944
AT1G26110.1	Bra017639.1-P	AT4G34230.1	21798944
AT1G26110.1	Bra028719.1-P	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36091	Canola	nucleus	98.16	98.16
AT1G26110.1	Thale cress	nucleus	85.09	83.14
Zm00001d051566_P001	Maize	nucleus	9.21	61.11
VIT_01s0011g02820.t01	Wine grape	nucleus	58.12	56.33
PGSC0003DMT400002103	Potato	nucleus	54.94	54.85
KRH70633	Soybean	nucleus	56.11	54.38
KRH75529	Soybean	nucleus	55.44	54.17
Solyc05g009980.2.1	Tomato	nucleus	53.77	53.59
KRH70630	Soybean	nucleus	55.61	53.55
KRH62823	Soybean	nucleus	54.94	52.9
GSMUA_Achr1P20740_001	Banana	nucleus	47.91	48.56
GSMUA_Achr2P07060_001	Banana	nucleus	45.23	45.53
GSMUA_Achr9P00760_001	Banana	nucleus	45.39	45.09
Os01t0111200-01	Rice	nucleus	44.72	43.06
Zm00001d040142_P001	Maize	nucleus, plastid	45.73	42.19
EES02617	Sorghum	nucleus, plastid	46.57	41.99
Zm00001d008439_P001	Maize	plasma membrane	45.23	41.6
HORVU3Hr1G000880.1	Barley	nucleus	44.56	40.3
TraesCS3A01G006100.1	Wheat	nucleus	44.72	40.27
TraesCS3D01G004500.1	Wheat	plastid	43.72	39.31
Zm00001d027310_P001	Maize	nucleus, plastid	16.75	32.05
Bra021964.1-P	Field mustard	nucleus, plastid	26.8	29.96
Bra027601.1-P	Field mustard	nucleus, plastid	26.47	28.52

Protein Annotations

MapMan:16.8.2.2.3	Gene3D:2.30.30.100	EnsemblPlantsGene:Bra011009	EnsemblPlants:Bra011009.1	EnsemblPlants:Bra011009.1-P	InterPro:DFDF
InterPro:FDF_dom	InterPro:FFD_box	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0010606	GO:GO:0016043	GO:GO:0017148
GO:GO:0019538	GO:GO:0031087	GO:GO:0033962	GO:GO:0042803	InterPro:IPR025761	InterPro:IPR025762
InterPro:IPR025768	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N	UniProt:M4D3F5	PFAM:PF09532	PFAM:PF12701
PFscan:PS51512	PFscan:PS51513	PFscan:PS51536	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	SMART:SM01199
SMART:SM01271	SUPFAM:SSF50182	InterPro:TFG_box	UniParc:UPI0002545E52	SEG:seg	:

Description

AT1G26110 (E=8e-228) | unknown protein

Coordinates

chrA08:-:17572159..17574971

Molecular Weight (calculated)

62976.0 Da

IEP (calculated)

6.930

GRAVY (calculated)

-0.671

Length

597 amino acids

Sequence
(BLAST)

001: MATDNTGAKS SSSSADSYVG SLISLTSKSE IRYEGILYNI NTDESSIGLQ NVRSFGTEGR KKDGPQVPPS EKVYEYILFR GTDIKDLQVK ASPPVQPPAP
101: PTLNNDPAII QSHYPSPIPT SSGLPPAVSS SMPDISSHNG QPGQHGMGFQ NSMPLYQPGG NLAPWGASPQ PPMYWQGYYT PPPNGLPQLH QQSLIRPPHG
201: LPMPGSLPQP IPYPNFNAPQ PTGSSNLQGS SLPEPPSSLF PYSSSSQALA PSSLPFTGLP MTMSSGLQST LQSAPSPSLA SEMAPPLFSN KAPIAAPPTL
301: PQDTNLLPFS LPTTRATDTS AGFSLVTDPI SVPQTTPLAS APDSEVSSSI SQDKPKPLLV TPGQLLQSGS ASVSLSPPSN NAGKDDEVVQ VSSSAALEQS
401: APVTSEAQPP ILPLPSSARP THKPNGHSFP THNGYRGRGR GRGRGTGRSH QVMKFTEDFD FTAMNEKFNK DEVWGHLGKS TNGDGDDDFP IVDEPEAPKV
501: EVKPVYNKDD FFDSLSSNSG DRDSQNARPR FSELRKLDTE TFGEFSRFRG GRGGRGGYGR NGHSRGGYGG RGYGGYNGRG GGGGGYGYGG RGQGRGV

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.