CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91021
KRG95373
KRH35742
KRH49040
KRH67057
KRH67059
KRH71867
KRH74166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	KRH49040	AT4G29510.1	21798944
AT1G26110.1	KRH74166	AT4G29510.1	21798944
AT1G26110.1	KRG91021	AT4G34230.1	21798944
AT1G26110.1	KRH35742	AT4G34230.1	21798944
AT1G26110.1	KRG95373	AT5G06770.1	21798944
AT1G26110.1	KRH67057	AT5G06770.1	21798944
AT1G26110.1	KRH67059	AT5G06770.1	21798944
AT1G26110.1	KRH71867	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70630	Soybean	nucleus	92.26	92.26
KRH75529	Soybean	nucleus	87.1	88.38
KRH70633	Soybean	nucleus	86.45	87.01
KRG93865	Soybean	cytosol	6.77	80.77
Zm00001d051566_P001	Maize	nucleus	9.19	63.33
VIT_01s0011g02820.t01	Wine grape	nucleus	62.9	63.31
PGSC0003DMT400002103	Potato	nucleus	57.1	59.2
Solyc05g009980.2.1	Tomato	nucleus	54.84	56.76
AT1G26110.1	Thale cress	nucleus	55.32	56.14
GSMUA_Achr1P20740_001	Banana	nucleus	53.23	56.03
CDY20530	Canola	nucleus	54.35	55.98
Bra011009.1-P	Field mustard	nucleus	52.9	54.94
CDY36091	Canola	nucleus	52.42	54.44
CDY55955	Canola	nucleus	51.94	54.03
CDY51127	Canola	nucleus	50.97	54.02
GSMUA_Achr2P07060_001	Banana	nucleus	50.32	52.61
GSMUA_Achr9P00760_001	Banana	nucleus	50.0	51.58
Os01t0111200-01	Rice	nucleus	45.97	45.97
Zm00001d040142_P001	Maize	nucleus, plastid	45.65	43.74
Zm00001d008439_P001	Maize	plasma membrane	45.48	43.45
EES02617	Sorghum	nucleus, plastid	45.97	43.05
HORVU3Hr1G000880.1	Barley	nucleus	44.84	42.12
TraesCS3A01G006100.1	Wheat	nucleus	44.19	41.33
TraesCS3D01G004500.1	Wheat	plastid	43.55	40.66
Zm00001d027310_P001	Maize	nucleus, plastid	17.74	35.26
KRH76455	Soybean	nucleus	30.81	33.87
KRH39773	Soybean	endoplasmic reticulum	28.06	29.54

Protein Annotations

Gene3D:2.30.30.100	MapMan:35.1	EMBL:ACUP02002366	InterPro:DFDF	InterPro:FDF_dom	InterPro:FFD_box
EnsemblPlantsGene:GLYMA_04G134900	UniProt:I1JW36	InterPro:IPR025761	InterPro:IPR025762	InterPro:IPR025768	EnsemblPlants:KRH62823
ProteinID:KRH62823	ProteinID:KRH62823.1	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N	PFAM:PF09532	PFAM:PF12701
PFscan:PS51512	PFscan:PS51513	PFscan:PS51536	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	SMART:SM01199
SMART:SM01271	SUPFAM:SSF50182	InterPro:TFG_box	UniParc:UPI00023C08FE	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:19575135..19581222

Molecular Weight (calculated)

65484.4 Da

IEP (calculated)

7.297

GRAVY (calculated)

-0.508

Length

620 amino acids

Sequence
(BLAST)

001: MASESASRSS SAADSYIGSL ISLTSKSEIR YEGILYNINT EESSIGLRNV RSFGTEGRKK DGLQIPPGDK IYEYILFRGT DIKDLQVKSS PPVQPTPQVN
101: NDPAIIQSHY PHPVTTSTNL PSAVSGSLSD PSSHTTQHGL PGSNFQGPLP LYQPGGNIGS WGASPSAPNA NGGRLGMPPM YWQGYYGAPN GLPQLHQQSL
201: LQPPPGLSMP SSMQQPMQYP NITPSLPTVS SNLPELPSSL LPASASIPSI TSASLPPSNL PPAPSALAPA PSALPPAPSA LSPSSSALSP APSATLASEI
301: LPVSVTNEAP IVSTSAAMLA ANLPSLTISG PDINAIVPPI SSKPHAISGS SLPYQTVSQF SPAVVGSSTS IHSETSAPSL VIPGRLLQPG PSIVSSAQPS
401: QAPHKDVEVV QVSSTSSSEP SVPVLAETQP PILPLPVTSR PSYRPGGAPI QTHHGYNYRG RGRGRGTGGL RPVTKFTEDF DFMAMNEKFK KDEVWGHLGK
501: SKSHSKEKDG EENAFDEDYQ DEDNDDVSNI EVKPLYNKDD FFDSLSSNMH GNASQNGRTR YSEQIKIDTE TFGDFVRHHG GRRGRGPGRV GRTRGGYYGR
601: LGGYGYNGRG RGRGMSSQNL

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.