CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62823	Soybean	nucleus	80.77	6.77
KRH70633	Soybean	nucleus	78.85	6.66
KRH70630	Soybean	nucleus	78.85	6.61
KRH75529	Soybean	nucleus	76.92	6.55
GSMUA_Achr9P00760_001	Banana	nucleus	71.15	6.16
Os01t0111200-01	Rice	nucleus	71.15	5.97
GSMUA_Achr1P20740_001	Banana	nucleus	67.31	5.94
PGSC0003DMT400002103	Potato	nucleus	67.31	5.85
VIT_01s0011g02820.t01	Wine grape	nucleus	69.23	5.84
Solyc05g009980.2.1	Tomato	nucleus	67.31	5.84
GSMUA_Achr2P07060_001	Banana	nucleus	65.38	5.73
EES02617	Sorghum	nucleus, plastid	63.46	4.98
HORVU3Hr1G000880.1	Barley	nucleus	61.54	4.85
TraesCS3D01G004500.1	Wheat	plastid	61.54	4.82
Zm00001d040142_P001	Maize	nucleus, plastid	59.62	4.79
Zm00001d008439_P001	Maize	plasma membrane	57.69	4.62
TraesCS3A01G006100.1	Wheat	nucleus	55.77	4.37
KRH76455	Soybean	nucleus	46.15	4.26
KRH39773	Soybean	endoplasmic reticulum	40.38	3.57
Zm00001d027310_P001	Maize	nucleus, plastid	5.77	0.96
Zm00001d051566_P001	Maize	nucleus	0.0	0.0

Protein Annotations

EMBL:ACUP02011636	EnsemblPlants:KRG93865	EnsemblPlantsGene:GLYMA_19G046400	Gene3D:2.30.30.100	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N
PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	PFAM:PF12701	ProteinID:KRG93865	ProteinID:KRG93865.1	SMART:SM01271
SUPFAM:SSF50182	UniParc:UPI0006EDB987	UniProt:A0A0R0EI21	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr19:+:7140741..7144300

Molecular Weight (calculated)

5691.8 Da

IEP (calculated)

8.990

GRAVY (calculated)

-0.250

Length

52 amino acids

Sequence
(BLAST)

1: MASESASRLT SMADSYIGSL ISLTSKSEIK YKGILYHINT EESNIGLKNK PL

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.