Factsheet for Zm00001d008439_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001933_P001
Zm00001d015618_P001
Zm00001d020188_P001
Zm00001d032312_P001
Zm00001d036796_P004
Zm00001d046740_P001
Zm00001d053682_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	Zm00001d020188_P001	AT4G29510.1	21798944
AT1G26110.1	Zm00001d015618_P001	AT4G34230.1	21798944
AT1G26110.1	Zm00001d001933_P001	AT5G06770.1	21798944
AT1G26110.1	Zm00001d032312_P001	AT5G06770.1	21798944
AT1G26110.1	Zm00001d036796_P004	AT5G06770.1	21798944
AT1G26110.1	Zm00001d046740_P001	AT5G06770.1	21798944
AT1G26110.1	Zm00001d053682_P001	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02617	Sorghum	nucleus, plastid	90.45	88.67
Zm00001d040142_P001	Maize	nucleus, plastid	83.36	83.62
Zm00001d051566_P001	Maize	nucleus	11.4	82.22
Os01t0111200-01	Rice	nucleus	70.42	73.71
HORVU3Hr1G000880.1	Barley	nucleus	65.95	64.85
VIT_02s0087g00680.t01	Wine grape	cytosol	8.17	63.1
TraesCS3A01G006100.1	Wheat	nucleus	61.02	59.73
TraesCS3D01G004500.1	Wheat	plastid	60.71	59.34
Zm00001d027310_P001	Maize	nucleus, plastid	28.35	58.97
KRG93865	Soybean	cytosol	4.62	57.69
GSMUA_Achr1P20740_001	Banana	nucleus	47.0	51.78
GSMUA_Achr2P07060_001	Banana	nucleus	45.76	50.08
Solyc08g075300.2.1	Tomato	nucleus, plastid	24.19	49.53
GSMUA_Achr9P00760_001	Banana	nucleus	44.68	48.25
VIT_01s0011g02820.t01	Wine grape	nucleus	45.15	47.56
KRH70630	Soybean	nucleus	43.91	45.97
KRH75529	Soybean	nucleus	43.14	45.83
KRH70633	Soybean	nucleus	43.3	45.62
KRH62823	Soybean	nucleus	43.45	45.48
Bra011009.1-P	Field mustard	nucleus	41.6	45.23
AT1G26110.1	Thale cress	nucleus	42.37	45.01
CDY36091	Canola	nucleus	41.14	44.72
CDY55955	Canola	nucleus	40.99	44.63
PGSC0003DMT400002103	Potato	nucleus	40.99	44.48
CDY20530	Canola	nucleus	40.52	43.69
Solyc05g009980.2.1	Tomato	nucleus	40.06	43.41
CDY51127	Canola	nucleus	38.98	43.25
Zm00001d037446_P005	Maize	nucleus	41.6	39.07
KRH76455	Soybean	nucleus	28.35	32.62
Solyc03g119850.1.1	Tomato	mitochondrion	20.96	31.34
VIT_02s0087g00650.t01	Wine grape	cytosol	23.57	29.88
CDY70855	Canola	plastid	11.25	29.32
Bra027601.1-P	Field mustard	nucleus, plastid	24.5	28.7
CDY68331	Canola	nucleus, plastid	23.11	28.68
CDX87795	Canola	nucleus	22.65	28.6
AT5G45330.1	Thale cress	nucleus, plastid	25.12	28.55
Bra021964.1-P	Field mustard	nucleus, plastid	23.27	28.28
KRH39773	Soybean	endoplasmic reticulum	25.27	27.84
PGSC0003DMT400010431	Potato	nucleus	28.66	26.96
Solyc06g069280.2.1	Tomato	nucleus	27.73	25.9
CDY13062	Canola	nucleus, plastid	15.25	23.68

Protein Annotations

EntrezGene:100191766	MapMan:16.8.2.2.3	Gene3D:2.30.30.100	ProteinID:AQK89887.1	InterPro:DFDF	InterPro:FDF_dom
InterPro:FFD_box	InterPro:IPR025761	InterPro:IPR025762	InterPro:IPR025768	UniProt:K7UXV6	InterPro:LSM_dom_sf
InterPro:Lsm14-like_N	PFAM:PF09532	PFAM:PF12701	PFscan:PS51512	PFscan:PS51513	PFscan:PS51536
PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182	InterPro:TFG_box
UniParc:UPI0002211C69	EnsemblPlantsGene:Zm00001d008439	EnsemblPlants:Zm00001d008439_P001	EnsemblPlants:Zm00001d008439_T001	SEG:seg	:

Description

Protein decapping 5

Coordinates

chr8:-:8693084..8698743

Molecular Weight (calculated)

68084.2 Da

IEP (calculated)

8.516

GRAVY (calculated)

-0.568

Length

649 amino acids

Sequence
(BLAST)

001: MAAEAPPSAS ASASSSSAPR PPTAAASAPG GGGGGAPASA ESYLGSLISL TSKSEIRYEG VLYDINTEES SIGLRNVRSF GTEGRKKDGV QIPASDKVYE
101: YILFRGTDIK DLQVKSSPPQ PPPPQAASLH NDPAIIQSHY SQPASTSSSL PSAGGAVLPD FSSQAVQYGL QRPTFQSNLP LYQPGNTPWG SSVAPPAGNA
201: PWGSSVAPPA GNASTLSVPS MYWQGYYAPS SGLPHHLQPP PLLHPTPGLS VPQNLQYPGL NPSLQSGPQK LSELQPSLMP PITSQGPSSG ILPATTAPAS
301: ATLLAPESSK PLLPNMGSLF APRATSLGAT FPLPSQPTAV AETSATVSQN LTSFGSSKVP ALPGSTLAYQ TVSQSVSSTI APSSSAQAEM PVPLLAPSGQ
401: LLQNTSSILS SSHSMQAPLQ LASKEVKPIE PKAKVAEPLL PDPLLPDPPS RAMPEIKEPI LPLPKQTPQK YNGSGSRNHH NFRGRGRGRG SAFSQSVTAF
501: TEEFDFTAMN EKFNKDEVWG HLGKKSQSRD KDGEVGDDVF DEELEAEETD NPELAVKPVY VKDDFFDSLS SGTFGRGGPN GRGRPSERRR VDTETFGEFP
601: RHRQPYRGGG RGYRGGGRSR GSYYGGRGYG NTGRGGPGNS YPHWGNGRD

Best Arabidopsis Sequence Match ( AT1G26110.2 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKM HENLSGGRGR GRGRGAGRSH QVMKFTEDFD FTAMNEKFNK DEVWGHLGKS TTLDGDEDDD SPTVDEAELP
501: KIEAKPVYNK DDFFDSLSSN TIDRESQNSR PRFSEQRKLD TETFGEFSRF RGGRGGRGGY GRNNGYSRGG YGGRGYGGYG GRGGGGGGYG YGGRGQGRGV
601: SNRTT

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.