CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39773	Soybean	endoplasmic reticulum	78.9	75.55
Zm00001d051566_P001	Maize	nucleus	7.8	48.89
Solyc08g075300.2.1	Tomato	nucleus, plastid	27.13	48.27
KRG93865	Soybean	cytosol	4.26	46.15
VIT_02s0087g00650.t01	Wine grape	cytosol	36.35	40.04
CDY70855	Canola	plastid	15.07	34.14
AT5G45330.1	Thale cress	nucleus, plastid	34.04	33.63
GSMUA_Achr2P07060_001	Banana	nucleus	34.93	33.22
KRH70633	Soybean	nucleus	36.17	33.12
KRH70630	Soybean	nucleus	35.99	32.74
GSMUA_Achr1P20740_001	Banana	nucleus	33.51	32.09
KRH75529	Soybean	nucleus	34.75	32.08
GSMUA_Achr9P00760_001	Banana	nucleus	33.16	31.11
KRH62823	Soybean	nucleus	33.87	30.81
CDX87795	Canola	nucleus	28.01	30.74
Bra021964.1-P	Field mustard	nucleus, plastid	28.72	30.34
CDY68331	Canola	nucleus, plastid	28.01	30.21
Os01t0111200-01	Rice	nucleus	32.98	30.0
Bra027601.1-P	Field mustard	nucleus, plastid	28.01	28.52
Zm00001d008439_P001	Maize	plasma membrane	32.62	28.35
EES02617	Sorghum	nucleus, plastid	32.98	28.1
HORVU3Hr1G000880.1	Barley	nucleus	32.8	28.03
Zm00001d040142_P001	Maize	nucleus, plastid	31.91	27.82
TraesCS3A01G006100.1	Wheat	nucleus	32.09	27.3
TraesCS3D01G004500.1	Wheat	plastid	31.03	26.36
Zm00001d027310_P001	Maize	nucleus, plastid	12.94	23.4
CDY13062	Canola	nucleus, plastid	16.49	22.25

Protein Annotations

EntrezGene:102669894	Gene3D:2.30.30.100	MapMan:35.1	EMBL:ACUP02000613	InterPro:DFDF	InterPro:FDF_dom
InterPro:FFD_box	EnsemblPlantsGene:GLYMA_01G153100	UniProt:I1J869	InterPro:IPR025761	InterPro:IPR025762	InterPro:IPR025768
EnsemblPlants:KRH76455	ProteinID:KRH76455	ProteinID:KRH76455.1	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N	PFAM:PF09532
PFAM:PF12701	PFscan:PS51512	PFscan:PS51513	PFscan:PS51536	PANTHER:PTHR13586	PANTHER:PTHR13586:SF3
SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182	InterPro:TFG_box	UniParc:UPI0002951BCF	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:49020469..49026558

Molecular Weight (calculated)

60408.1 Da

IEP (calculated)

6.906

GRAVY (calculated)

-0.497

Length

564 amino acids

Sequence
(BLAST)

001: MATESGANGP SSSSAESFIG CFISLISKCE IRYEGVLYFL NIQDSTIGLK NVRSYGTEGR KKDGPQVPSS DKVYEYILFR GNDIKNLQIK SPTPSSKSEE
101: QVFSDPAVIQ SEYSGLRSSP VGELPSSPVA GLLSSPVASV GGRSLTESIQ RQDSPAISSK AFPSGLPSHQ SVTQLGPSNL SDATQVASHP SFSAAMYWQG
201: PSGISSSSYH SLLQSSSLHP TSLAASLVVQ NQMQNAETQV PINGGWTGLS EYGLPVSSAM TSLVNQTHSP SLTSLKNSDS LDIPSLLSTK TPVSYSPSMT
301: FDGSNMPQFS STLQDINSIQ AQISGNICPD PRPIHPQHSV HRSAPSYVDS TSGSLPTATS LLTPDQFAYP REQLLSLSHL NPTQKDMGSL TLTSSGSSAL
401: IPSPASQAPL LPLPTSVQKP PYTAPQYTEE FDFEAMNEKF KKDEVWGSLG KTTTKIEGVA NNASLSLGDR ECHGVIPNPK TAYKKDDFFD TISCNSLTHG
501: SRNGQNRFSE RMKQDTETFG NFQQRPNFTN GGYGAGRGAN FRGSNNWGRG YGYNGRGRGP NFPF

Best Arabidopsis Sequence Match ( AT5G45330.1 )
(BLAST)

001: MASESSQSSS PSSSQPPSSV PSPSPGNNVG DTFIGSFISL ISKYEIRYEG ILYHLNVQDS TLGLKNVRSC GTEGRKKDGP QIPPCDKVYD YILFRGSDIK
101: DLQVNPSPSA QSRQEIQSEQ DVNQSPHSRP AMTMSSPISG YDSGYGLGRG SQWINTPALS SKPVPVTQHS SVPLSFQPPS ANAGSLTESP VSLIDSTQSN
201: AGSSMPIPSF VQGNKFASSG VPLGMMQKPV SSSSTIPNGP QIIDYFSSPI MGLVDDSSQV VTRSPDVSSN QSYSSNPSPL GQTQLHTPPG LASVSSNLSP
301: PSEAQLSAPN IQKIYPSAPQ AIGKVVYDPQ SNHPHRSIPH ELPAVASNSA PVIPGPLSKS PESFFDMDPS LQSRQQMVYR GQEMFAATNP ASANVPSQSF
401: APRNHAPLLP LPVSAHQSRI PSSSIEYTEE FDFEAMNEKF KKSELWGYLG RNNQRNQNDY GEETAIEPNA EGKPAYNKDD FFDTISCNQL DRVARSGQQH
501: NQFPEHMRQV PEAFGNNFQR PPPLQPGQGA YLAAQTNYRG GYHNNNNNNY YSNSGYGYYS GGRGRGRNTH F

Arabidopsis Description

DCP5-LDecapping 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9FH77]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.