Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0087g00680.t01 | Wine grape | cytosol | 18.61 | 70.24 |
| Zm00001d051566_P001 | Maize | nucleus | 13.25 | 46.67 |
| CDY70855 | Canola | plastid | 23.97 | 30.52 |
| KRH76455 | Soybean | nucleus | 48.27 | 27.13 |
| CDX87795 | Canola | nucleus | 43.85 | 27.04 |
| CDY68331 | Canola | nucleus, plastid | 43.85 | 26.58 |
| Bra021964.1-P | Field mustard | nucleus, plastid | 44.16 | 26.22 |
| AT5G45330.1 | Thale cress | nucleus, plastid | 46.37 | 25.74 |
| Bra027601.1-P | Field mustard | nucleus, plastid | 44.8 | 25.63 |
| GSMUA_Achr1P20740_001 | Banana | nucleus | 46.69 | 25.13 |
| Zm00001d040142_P001 | Maize | nucleus, plastid | 50.79 | 24.88 |
| GSMUA_Achr2P07060_001 | Banana | nucleus | 46.37 | 24.79 |
| Os01t0111200-01 | Rice | nucleus | 47.95 | 24.52 |
| Solyc05g009980.2.1 | Tomato | nucleus | 45.74 | 24.21 |
| Zm00001d008439_P001 | Maize | plasma membrane | 49.53 | 24.19 |
| GSMUA_Achr9P00760_001 | Banana | nucleus | 45.74 | 24.13 |
| EES02617 | Sorghum | nucleus, plastid | 49.84 | 23.87 |
| HORVU3Hr1G000880.1 | Barley | nucleus | 49.21 | 23.64 |
| TraesCS3A01G006100.1 | Wheat | nucleus | 48.27 | 23.08 |
| VIT_02s0087g00650.t01 | Wine grape | cytosol | 37.22 | 23.05 |
| TraesCS3D01G004500.1 | Wheat | plastid | 47.32 | 22.59 |
| KRH39773 | Soybean | endoplasmic reticulum | 41.32 | 22.24 |
| Solyc03g119850.1.1 | Tomato | mitochondrion | 28.08 | 20.51 |
| CDY13062 | Canola | nucleus, plastid | 26.18 | 19.86 |
| Zm00001d027310_P001 | Maize | nucleus, plastid | 16.72 | 16.99 |
| Solyc06g069280.2.1 | Tomato | nucleus | 34.7 | 15.83 |
Protein Annotations
| EnsemblPlants:Solyc08g075300.2.1 | EnsemblPlantsGene:Solyc08g075300.2 | Gene3D:2.30.30.100 | InterPro:DFDF | InterPro:FDF_dom | InterPro:FFD_box |
| InterPro:IPR025761 | InterPro:IPR025762 | InterPro:LSM_dom_sf | InterPro:Lsm14-like_N | PANTHER:PTHR13586 | PANTHER:PTHR13586:SF3 |
| PFAM:PF09532 | PFAM:PF12701 | PFscan:PS51512 | PFscan:PS51513 | SEG:seg | SMART:SM01199 |
| SMART:SM01271 | SUPFAM:SSF50182 | UniParc:UPI000276B4FC | UniProt:K4CMP7 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr8:-:59388330..59397200
Molecular Weight (calculated)
34323.6 Da
IEP (calculated)
9.032
GRAVY (calculated)
-0.832
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MANDSGNNQP PSTAAAAVSQ SPSSTPDSYI GSFISLTSKS EIRYEGVLDF LNTKDSSLGL KNVRSYGTEG RKKDGPQIPP NDKVFEFILF RGSDIKDLQV
101: KSSPSPQVEE SLDNDPAIIQ SRYAGVSPSS SKSVSLNAVQ APLLPLPPAA KKLQSSSEFT EEFDFVAMNE KFNKDEVWGY LGKAKQTAKK MEGVDIALVN
201: EDKGNEVDHG LDSNADPKPA YNKDDFFDNI SRNTVARGGR NGQNRISQRM RQDSETFGNH QQRPYANGVF GPGHGGHRGA YGYGPGNGGH RGAYGYGWGR
301: GFNNYGGRGR GGAHMRM
101: KSSPSPQVEE SLDNDPAIIQ SRYAGVSPSS SKSVSLNAVQ APLLPLPPAA KKLQSSSEFT EEFDFVAMNE KFNKDEVWGY LGKAKQTAKK MEGVDIALVN
201: EDKGNEVDHG LDSNADPKPA YNKDDFFDNI SRNTVARGGR NGQNRISQRM RQDSETFGNH QQRPYANGVF GPGHGGHRGA YGYGPGNGGH RGAYGYGWGR
301: GFNNYGGRGR GGAHMRM
001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKM HENLSGGRGR GRGRGAGRSH QVMKFTEDFD FTAMNEKFNK DEVWGHLGKS TTLDGDEDDD SPTVDEAELP
501: KIEAKPVYNK DDFFDSLSSN TIDRESQNSR PRFSEQRKLD TETFGEFSRF RGGRGGRGGY GRNNGYSRGG YGGRGYGGYG GRGGGGGGYG YGGRGQGRGV
601: SNRTT
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKM HENLSGGRGR GRGRGAGRSH QVMKFTEDFD FTAMNEKFNK DEVWGHLGKS TTLDGDEDDD SPTVDEAELP
501: KIEAKPVYNK DDFFDSLSSN TIDRESQNSR PRFSEQRKLD TETFGEFSRF RGGRGGRGGY GRNNGYSRGG YGGRGYGGYG GRGGGGGGYG YGGRGQGRGV
601: SNRTT
Arabidopsis Description
DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.