Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0087g00680.t01 | Wine grape | cytosol | 30.0 | 32.14 |
| Zm00001d027310_P001 | Maize | nucleus, plastid | 75.56 | 21.79 |
| Solyc08g075300.2.1 | Tomato | nucleus, plastid | 46.67 | 13.25 |
| Zm00001d008439_P001 | Maize | plasma membrane | 82.22 | 11.4 |
| Os01t0111200-01 | Rice | nucleus | 76.67 | 11.13 |
| EES02617 | Sorghum | nucleus, plastid | 81.11 | 11.03 |
| Zm00001d040142_P001 | Maize | nucleus, plastid | 78.89 | 10.97 |
| GSMUA_Achr1P20740_001 | Banana | nucleus | 64.44 | 9.85 |
| KRH75529 | Soybean | nucleus | 66.67 | 9.82 |
| TraesCS3A01G006100.1 | Wheat | nucleus | 72.22 | 9.8 |
| HORVU3Hr1G000880.1 | Barley | nucleus | 71.11 | 9.7 |
| TraesCS3D01G004500.1 | Wheat | plastid | 71.11 | 9.64 |
| KRH70633 | Soybean | nucleus | 65.56 | 9.58 |
| CDY51127 | Canola | nucleus | 62.22 | 9.57 |
| KRH70630 | Soybean | nucleus | 65.56 | 9.52 |
| VIT_01s0011g02820.t01 | Wine grape | nucleus | 64.44 | 9.42 |
| AT1G26110.1 | Thale cress | nucleus | 63.33 | 9.33 |
| CDY20530 | Canola | nucleus | 62.22 | 9.3 |
| CDY55955 | Canola | nucleus | 61.11 | 9.23 |
| CDY36091 | Canola | nucleus | 61.11 | 9.21 |
| Bra011009.1-P | Field mustard | nucleus | 61.11 | 9.21 |
| PGSC0003DMT400002103 | Potato | nucleus | 61.11 | 9.2 |
| KRH62823 | Soybean | nucleus | 63.33 | 9.19 |
| GSMUA_Achr2P07060_001 | Banana | nucleus | 60.0 | 9.11 |
| Solyc05g009980.2.1 | Tomato | nucleus | 60.0 | 9.02 |
| GSMUA_Achr9P00760_001 | Banana | nucleus | 60.0 | 8.99 |
| CDY13062 | Canola | nucleus, plastid | 40.0 | 8.61 |
| Zm00001d037446_P005 | Maize | nucleus | 63.33 | 8.25 |
| KRH76455 | Soybean | nucleus | 48.89 | 7.8 |
| Bra027601.1-P | Field mustard | nucleus, plastid | 45.56 | 7.4 |
| CDX87795 | Canola | nucleus | 42.22 | 7.39 |
| AT5G45330.1 | Thale cress | nucleus, plastid | 46.67 | 7.36 |
| CDY68331 | Canola | nucleus, plastid | 42.22 | 7.27 |
| Solyc03g119850.1.1 | Tomato | mitochondrion | 34.44 | 7.14 |
| Bra021964.1-P | Field mustard | nucleus, plastid | 42.22 | 7.12 |
| KRH39773 | Soybean | endoplasmic reticulum | 44.44 | 6.79 |
| PGSC0003DMT400010431 | Potato | nucleus | 41.11 | 5.36 |
| Solyc06g069280.2.1 | Tomato | nucleus | 40.0 | 5.18 |
| VIT_02s0087g00650.t01 | Wine grape | cytosol | 27.78 | 4.88 |
| CDY70855 | Canola | plastid | 11.11 | 4.02 |
| KRG93865 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d051566_P001 | EnsemblPlants:Zm00001d051566_T001 | EnsemblPlantsGene:Zm00001d051566 | Gene3D:2.30.30.100 | InterPro:LSM_dom_sf | InterPro:Lsm14-like_N |
| PANTHER:PTHR13586 | PANTHER:PTHR13586:SF10 | PFAM:PF12701 | ProteinID:AQK54579.1 | SEG:seg | SMART:SM01271 |
| SUPFAM:SSF50182 | UniParc:UPI0004DE9B73 | UniProt:A0A1D6Q834 | MapMan:35.1 | : | : |
Description
Protein decapping 5
Coordinates
chr4:-:162920158..162921863
Molecular Weight (calculated)
9788.5 Da
IEP (calculated)
8.934
GRAVY (calculated)
-0.514
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MDRVRSFGTQ GWKKDGVQIP ASDKVYEYIL FRGTDIKYLQ VKSLPPQPPP PQAASLHNDP TIIQSHYSQP ASTSSSLPST GGAVLPDFSS
001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKM HENLSGGRGR GRGRGAGRSH QVMKFTEDFD FTAMNEKFNK DEVWGHLGKS TTLDGDEDDD SPTVDEAELP
501: KIEAKPVYNK DDFFDSLSSN TIDRESQNSR PRFSEQRKLD TETFGEFSRF RGGRGGRGGY GRNNGYSRGG YGGRGYGGYG GRGGGGGGYG YGGRGQGRGV
601: SNRTT
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKM HENLSGGRGR GRGRGAGRSH QVMKFTEDFD FTAMNEKFNK DEVWGHLGKS TTLDGDEDDD SPTVDEAELP
501: KIEAKPVYNK DDFFDSLSSN TIDRESQNSR PRFSEQRKLD TETFGEFSRF RGGRGGRGGY GRNNGYSRGG YGGRGYGGYG GRGGGGGGYG YGGRGQGRGV
601: SNRTT
Arabidopsis Description
DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.