CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69037
CDX72466
CDX75413
CDY03574
CDY05002
CDY06802
CDY14208
CDY30213
CDY43510
CDY47762
CDY49288
CDY72512

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	CDY03574	AT4G29510.1	21798944
AT1G26110.1	CDY06802	AT4G29510.1	21798944
AT1G26110.1	CDY14208	AT4G29510.1	21798944
AT1G26110.1	CDY30213	AT4G29510.1	21798944
AT1G26110.1	CDY43510	AT4G29510.1	21798944
AT1G26110.1	CDY47762	AT4G29510.1	21798944
AT1G26110.1	CDX69037	AT4G34230.1	21798944
AT1G26110.1	CDX72466	AT4G34230.1	21798944
AT1G26110.1	CDX75413	AT4G34230.1	21798944
AT1G26110.1	CDY49288	AT4G34230.1	21798944
AT1G26110.1	CDY05002	AT5G06770.1	21798944
AT1G26110.1	CDY72512	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36091	Canola	nucleus	95.97	95.81
AT1G26110.1	Thale cress	nucleus	84.4	82.32
CDY51127	Canola	nucleus	78.36	79.83
CDY20530	Canola	nucleus	77.68	76.91
Zm00001d051566_P001	Maize	nucleus	9.23	61.11
VIT_01s0011g02820.t01	Wine grape	nucleus	58.05	56.17
PGSC0003DMT400002103	Potato	nucleus	54.53	54.35
Solyc05g009980.2.1	Tomato	nucleus	53.36	53.09
KRH70633	Soybean	nucleus	54.87	53.08
KRH75529	Soybean	nucleus	54.36	53.03
KRH70630	Soybean	nucleus	54.7	52.58
KRH62823	Soybean	nucleus	54.03	51.94
GSMUA_Achr1P20740_001	Banana	nucleus	47.65	48.22
GSMUA_Achr2P07060_001	Banana	nucleus	45.3	45.53
GSMUA_Achr9P00760_001	Banana	nucleus	44.97	44.59
Os01t0111200-01	Rice	nucleus	44.13	42.42
Zm00001d040142_P001	Maize	nucleus, plastid	45.3	41.73
EES02617	Sorghum	nucleus, plastid	45.97	41.39
Zm00001d008439_P001	Maize	plasma membrane	44.63	40.99
HORVU3Hr1G000880.1	Barley	nucleus	44.13	39.85
TraesCS3A01G006100.1	Wheat	nucleus	44.13	39.67
TraesCS3D01G004500.1	Wheat	plastid	43.12	38.7
Zm00001d027310_P001	Maize	nucleus, plastid	16.95	32.37
CDX87795	Canola	nucleus	26.51	30.74
CDY70855	Canola	plastid	12.58	30.12
CDY68331	Canola	nucleus, plastid	25.84	29.45
CDY13062	Canola	nucleus, plastid	17.28	24.64

Protein Annotations

MapMan:16.8.2.2.3	Gene3D:2.30.30.100	UniProt:A0A078IZI5	EnsemblPlants:CDY55955	ProteinID:CDY55955	ProteinID:CDY55955.1
InterPro:DFDF	InterPro:FDF_dom	InterPro:FFD_box	EnsemblPlantsGene:GSBRNA2T00017553001	InterPro:IPR025761	InterPro:IPR025762
InterPro:IPR025768	InterPro:LSM_dom_sf	InterPro:Lsm14-like_N	PFAM:PF09532	PFAM:PF12701	PFscan:PS51512
PFscan:PS51513	PFscan:PS51536	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	SMART:SM01199	SMART:SM01271
SUPFAM:SSF50182	InterPro:TFG_box	UniParc:UPI0004EAD219	SEG:seg	:	:

Description

BnaCnng29620DBnaCnng29620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZI5]

Coordinates

chrLK033442:-:19709..22909

Molecular Weight (calculated)

62985.9 Da

IEP (calculated)

7.146

GRAVY (calculated)

-0.681

Length

596 amino acids

Sequence
(BLAST)

001: MATDNTGAKS SSSSADSYVG SLISLTSKSE IRYEGILYNI NTDESSIGLQ NVRSFGTEGR KKDGPQVPPS EKVYEYILFR GTDIKDLQVK ASPPAQPTLN
101: NDPAIIQSHY PSPIPTSSVL PPTVSNSMPD ISSHNGQPSP GQHGMGFQNS MPLYQPGGNL APWGASPQPP MYWQGYYTPP PNGLPQLHQQ SLIRPPHGLP
201: IPGSLPQPIP YPNFNSPQPT GSSNLQGSSL PEPPSSLFPY SSSSQALAPS SLPFTGLPMT LSSGQQSTLQ SAPSPSLASE MAPPLFSNKA PIAAPPTLPQ
301: DTSLLPFSPP TTRATDTSAG FPLVTDPISV PQTTPLASAP DSEVSSSISQ DKPKPLLVTP GQLLQSGSAS VSLSPHSNNA GKDDELVQVS SSAALEQSAP
401: VTSEAQPPIL PLPSSARPTQ KPNGHSFPTH NGYRGRVRGR GRGAGRSHQV MKFTEDFDFT AMNEKFNKDE VWGHLGKSTN GDGDDDFPIV DEPELPKVEV
501: KPVYNKDDFF DSLSSNSGNR DSQNARPRFS ELRKLDTETF GEFSRFRGGR GGRGGYGRNG HSRGGYGGRG YGGYNGRGGG GGGGYGYGGR GQGRGV

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.