CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03574
CDY06802
CDY14208
CDY30213
CDY43510
CDY47762

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29510.1	CDY03574	AT4G29510.1	17666011
AT4G29510.1	CDY06802	AT4G29510.1	17666011
AT4G29510.1	CDY14208	AT4G29510.1	17666011
AT4G29510.1	CDY30213	AT4G29510.1	17666011
AT4G29510.1	CDY43510	AT4G29510.1	17666011
AT4G29510.1	CDY47762	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011118.1-P	Field mustard	cytosol	100.0	100.0
CDY06802	Canola	cytosol	98.72	98.97
CDY30213	Canola	cytosol	93.59	93.35
CDY47762	Canola	cytosol	92.82	93.3
AT4G29510.1	Thale cress	cytosol	91.54	91.54
CDY03574	Canola	cytosol	65.9	89.55
CDY14208	Canola	cytosol	74.36	88.15
CDX82711	Canola	cytosol	77.69	83.93
CDY35877	Canola	cytosol	77.69	83.47
Zm00001d020188_P001	Maize	extracellular	65.13	83.01
VIT_11s0016g02530.t01	Wine grape	cytosol	72.05	80.29
KRH74166	Soybean	nucleus	75.13	77.93
KRH49040	Soybean	nucleus	75.64	77.84
TraesCS5B01G187400.1	Wheat	cytosol	73.85	75.79
TraesCS5A01G196000.2	Wheat	cytosol	73.85	75.79
TraesCS5D01G195000.1	Wheat	cytosol	73.59	75.53
HORVU5Hr1G056790.7	Barley	cytosol	73.85	75.2
Os09t0359800-01	Rice	cytosol	74.62	75.19
Solyc07g032240.2.1	Tomato	cytosol	71.79	74.67
EER98789	Sorghum	cytosol	73.08	74.22
GSMUA_Achr6P22570_001	Banana	cytosol	72.82	73.2
PGSC0003DMT400000915	Potato	cytosol	74.1	72.98
Solyc12g008760.1.1	Tomato	cytosol	73.85	72.73
PGSC0003DMT400021726	Potato	cytosol	72.56	70.93
CDY24566	Canola	cytosol	37.44	34.19
CDY25372	Canola	cytosol	37.18	33.96
CDX82265	Canola	cytosol	36.92	33.88
CDY36064	Canola	cytosol	36.92	33.72
CDY33443	Canola	cytosol, endoplasmic reticulum, peroxisome	20.0	30.59
CDY66138	Canola	cytosol, peroxisome, plastid	29.49	29.95
CDY27881	Canola	mitochondrion	16.67	26.64
CDY42226	Canola	endoplasmic reticulum, extracellular	9.23	24.83
CDY00764	Canola	cytosol	34.62	23.48
CDY08441	Canola	cytosol	35.13	22.95
CDY42140	Canola	cytosol	34.62	22.92
CDX86257	Canola	cytosol, plastid	30.51	22.75
CDX85389	Canola	cytosol	30.26	22.56
CDX73828	Canola	cytosol	34.36	22.45
CDY33934	Canola	cytosol	29.49	21.74
CDY05647	Canola	cytosol	29.49	21.74
CDY05299	Canola	cytosol	28.97	21.32
CDY71180	Canola	cytosol	12.56	21.3
CDY24659	Canola	cytosol	28.97	21.24
CDY71161	Canola	cytosol	6.41	17.12
CDY49141	Canola	nucleus	8.97	12.46
CDY51773	Canola	nucleus	22.82	9.92

Protein Annotations

MapMan:12.3.4.1	Gene3D:2.70.160.11	Gene3D:3.40.50.150	GO:A0A078HYB7	UniProt:A0A078HYB7	InterPro:Arg_MeTrfase
EnsemblPlants:CDY43510	ProteinID:CDY43510	ProteinID:CDY43510.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006479	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00076793001	InterPro:IPR025799	PFAM:PF06325	PFscan:PS51678
PANTHER:PTHR11006	PANTHER:PTHR11006:SF53	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI000254552E	SEG:seg

Description

BnaA01g07340DBnaA01g07340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYB7]

Coordinates

chrLK032560:+:52121..54284

Molecular Weight (calculated)

44020.2 Da

IEP (calculated)

4.753

GRAVY (calculated)

-0.322

Length

390 amino acids

Sequence
(BLAST)

001: MTKKNNNNNN EEEEFVSFGH NLNTKIRFED ADEDEVAEGS GFEAAQDESM CEAGESTDAA QVTDDTTSAD YYFDSYSHFG IHEEMLKDVV RTKTYQNVIY
101: QNKFLIKDKI VLDVGAGTGI LSLFCAKAGA KHVYAVECSQ MADMAKEIVK ANGFSDVITV LKGKIEEIEL PTPKVDVIIS EWMGYFLLFE NMLDSVLYAR
201: NKWLVDGGIV LPDKASLFLT AIEDSEYKED KIEFWNSVYG FDMSCIKKKA MMEPLVDTVD QNQIVTDSKL LKTMDISKMS SGDASFTAPF KLVAQRNDYI
301: HALVAYFDVS FTMCHKLLGF STGPRSRATH WKQTVMYLED VLTICEGETI TGSMSVSYNK KNPRDVDIKL SYSLNGQHSK VSRTQHYKMR

Best Arabidopsis Sequence Match ( AT4G29510.1 )
(BLAST)

001: MTKNSNHDEN EFISFEPNQN TKIRFEDADE DEVAEGSGVA GEETPQDESM FDAGESADTA EVTDDTTSAD YYFDSYSHFG IHEEMLKDVV RTKTYQNVIY
101: QNKFLIKDKI VLDVGAGTGI LSLFCAKAGA AHVYAVECSQ MADMAKEIVK ANGFSDVITV LKGKIEEIEL PTPKVDVIIS EWMGYFLLFE NMLDSVLYAR
201: DKWLVEGGVV LPDKASLHLT AIEDSEYKED KIEFWNSVYG FDMSCIKKKA MMEPLVDTVD QNQIVTDSRL LKTMDISKMS SGDASFTAPF KLVAQRNDYI
301: HALVAYFDVS FTMCHKLLGF STGPKSRATH WKQTVLYLED VLTICEGETI TGTMSVSPNK KNPRDIDIKL SYSLNGQHCK ISRTQHYKMR

Arabidopsis Description

PRMT11Protein arginine N-methyltransferase 1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.