CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH49040
KRH74166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29510.1	KRH49040	AT4G29510.1	17666011
AT4G29510.1	KRH74166	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49040	Soybean	nucleus	97.34	96.57
Zm00001d020188_P001	Maize	extracellular	69.68	85.62
VIT_11s0016g02530.t01	Wine grape	cytosol	79.26	85.14
GSMUA_Achr6P22570_001	Banana	cytosol	80.85	78.35
Solyc07g032240.2.1	Tomato	cytosol	77.39	77.6
CDX82711	Canola	cytosol	74.47	77.56
Bra039010.1-P	Field mustard	cytosol	74.2	76.86
CDY35877	Canola	cytosol	74.2	76.86
Os09t0359800-01	Rice	cytosol	78.72	76.49
EER98789	Sorghum	cytosol	77.93	76.3
AT2G19670.1	Thale cress	cytosol	74.2	76.23
TraesCS5A01G196000.2	Wheat	cytosol	76.6	75.79
TraesCS5B01G187400.1	Wheat	cytosol	76.6	75.79
TraesCS5D01G195000.1	Wheat	cytosol	76.33	75.53
HORVU5Hr1G056790.7	Barley	cytosol	76.86	75.46
CDY06802	Canola	cytosol	77.93	75.32
CDY43510	Canola	cytosol	77.93	75.13
Bra011118.1-P	Field mustard	cytosol	77.93	75.13
AT4G29510.1	Thale cress	cytosol	77.66	74.87
CDY14208	Canola	cytosol	65.43	74.77
CDY03574	Canola	cytosol	56.65	74.22
Bra024143.1-P	Field mustard	cytosol	76.6	74.04
Solyc12g008760.1.1	Tomato	cytosol	77.93	73.99
PGSC0003DMT400000915	Potato	cytosol	77.93	73.99
CDY47762	Canola	cytosol	76.33	73.97
PGSC0003DMT400021726	Potato	cytosol	77.93	73.43
CDY30213	Canola	cytosol	76.06	73.15
Bra010325.1-P	Field mustard	cytosol	32.71	71.51
KRH17553	Soybean	cytosol	9.84	43.02
KRH40914	Soybean	cytosol, plastid	26.6	38.76
KRH11256	Soybean	endoplasmic reticulum	28.46	34.63
KRG89089	Soybean	nucleus	36.97	34.24
KRG90589	Soybean	cytosol, plastid	34.57	31.78
KRH54868	Soybean	cytosol	30.59	30.75
KRH63019	Soybean	cytosol	29.79	29.95
KRH30091	Soybean	nucleus	35.9	21.67
KRH37109	Soybean	cytosol	30.59	21.42
KRH02253	Soybean	cytosol	30.32	21.31
KRH12054	Soybean	cytosol	30.59	21.14
KRH50844	Soybean	cytosol	30.05	21.08
KRH62812	Soybean	cytosol	35.11	20.95

Protein Annotations

MapMan:12.3.4.1	Gene3D:2.70.160.11	Gene3D:3.40.50.150	EMBL:ACUP02000007	InterPro:Arg_MeTrfase	EnsemblPlantsGene:GLYMA_01G003800
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0006479	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008469	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0019538	GO:GO:0019919	GO:GO:0032259	GO:GO:0034969	GO:GO:0035242
UniProt:I1J4C9	InterPro:IPR025799	EnsemblPlants:KRH74166	ProteinID:KRH74166	ProteinID:KRH74166.1	PFAM:PF13649
PFscan:PS51678	PANTHER:PTHR11006	PANTHER:PTHR11006:SF53	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI0002337623

Description

hypothetical protein

Coordinates

chr1:-:397272..400412

Molecular Weight (calculated)

42663.8 Da

IEP (calculated)

4.905

GRAVY (calculated)

-0.290

Length

376 amino acids

Sequence
(BLAST)

001: MGQRKNDNNI NQCSSSKEDA DMNNNHLRFE EAVDESSNLD QSMCDIEESD DKTSADYYFD SYSHFGIHEE MLKDTVRTKT YQNVIYQNKF LFKNKVVLDV
101: GAGTGILSLF CAKAGAEHVY AVECSHMADM AKEIVEANGY SNVVTVLKGK IEEIELPVAK VDIIISEWMG YFLLFENMLN SVLYARDKWL VDGGVVLPDK
201: ASLHLTAIED ADYKEDKIEF WNNVYGFDMS CIKKQAIMEP LVDTVDQNQI ATNCQLLKTM DISKMAPGDA SFTVPFKLVA ERDDYIHALV AYFDVSFTKC
301: HKLMGFSTGP RSRATHWKQT VLYLEDVLTI CEGEAIVGSM AVAPNKKNPR DVDIMLKYSL NGRRCNVSRV QYYKMR

Best Arabidopsis Sequence Match ( AT4G29510.1 )
(BLAST)

001: MTKNSNHDEN EFISFEPNQN TKIRFEDADE DEVAEGSGVA GEETPQDESM FDAGESADTA EVTDDTTSAD YYFDSYSHFG IHEEMLKDVV RTKTYQNVIY
101: QNKFLIKDKI VLDVGAGTGI LSLFCAKAGA AHVYAVECSQ MADMAKEIVK ANGFSDVITV LKGKIEEIEL PTPKVDVIIS EWMGYFLLFE NMLDSVLYAR
201: DKWLVEGGVV LPDKASLHLT AIEDSEYKED KIEFWNSVYG FDMSCIKKKA MMEPLVDTVD QNQIVTDSRL LKTMDISKMS SGDASFTAPF KLVAQRNDYI
301: HALVAYFDVS FTMCHKLLGF STGPKSRATH WKQTVLYLED VLTICEGETI TGTMSVSPNK KNPRDIDIKL SYSLNGQHCK ISRTQHYKMR

Arabidopsis Description

PRMT11Protein arginine N-methyltransferase 1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.