CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17553	Soybean	cytosol	18.47	87.21
KRH40914	Soybean	cytosol, plastid	52.22	82.17
VIT_10s0071g00750.t01	Wine grape	cytosol	74.14	72.71
GSMUA_AchrUn_...	Banana	cytosol	43.1	72.31
Solyc04g008860.2.1	Tomato	nucleus	73.4	69.14
CDY36064	Canola	cytosol	72.66	69.09
CDX82265	Canola	cytosol	71.67	68.47
Bra035822.1-P	Field mustard	cytosol	71.67	68.15
CDY24566	Canola	cytosol	71.67	68.15
CDY25372	Canola	cytosol	71.67	68.15
Bra001772.1-P	Field mustard	cytosol	71.43	66.82
GSMUA_AchrUn_...	Banana	cytosol, vacuole	8.37	66.67
AT3G20020.3	Thale cress	cytosol	70.2	64.33
KRH11256	Soybean	endoplasmic reticulum	47.29	62.14
EES11648	Sorghum	mitochondrion	59.36	62.11
OQU91600	Sorghum	cytosol	61.33	61.79
TraesCS1B01G185000.1	Wheat	peroxisome	44.34	61.64
KRG90589	Soybean	cytosol, plastid	61.82	61.37
Zm00001d032633_P004	Maize	mitochondrion	60.59	61.04
Os10t0489100-01	Rice	cytosol, nucleus	59.11	60.76
TraesCS1A01G171700.1	Wheat	cytosol	59.36	60.71
TraesCS1D01G172200.1	Wheat	cytosol	58.87	60.2
Zm00001d026614_P001	Maize	mitochondrion	57.14	59.95
TraesCS2B01G590000.1	Wheat	mitochondrion	55.17	58.95
TraesCS2D01G560200.1	Wheat	mitochondrion	56.9	58.78
TraesCS2A01G554100.1	Wheat	mitochondrion	56.4	58.57
Os04t0677066-00	Rice	nucleus	54.68	56.49
HORVU1Hr1G044440.3	Barley	plastid	58.62	56.26
HORVU2Hr1G119480.1	Barley	cytosol	49.75	53.44
GSMUA_Achr5P10850_001	Banana	cytosol, golgi, plastid	42.12	51.82
GSMUA_Achr5P10840_001	Banana	cytosol	52.71	48.97
CDY33443	Canola	cytosol, endoplasmic reticulum, peroxisome	29.31	46.67
KRH49040	Soybean	nucleus	34.73	37.2
KRH74166	Soybean	nucleus	34.24	36.97
KRH54868	Soybean	cytosol	33.5	36.36
CDY42226	Canola	endoplasmic reticulum, extracellular	12.81	35.86
KRH63019	Soybean	cytosol	32.76	35.56
KRH02253	Soybean	cytosol	29.56	22.43
KRH50844	Soybean	cytosol	29.31	22.2
KRH37109	Soybean	cytosol	29.31	22.16
KRH12054	Soybean	cytosol	29.56	22.06
KRH30091	Soybean	nucleus	33.5	21.83
KRH62812	Soybean	cytosol	33.25	21.43

Protein Annotations

EntrezGene:100809171	Gene3D:2.70.160.11	Gene3D:3.40.50.150	MapMan:35.1	EMBL:ACUP02012184	InterPro:Arg_MeTrfase
EnsemblPlantsGene:GLYMA_20G000400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0006479
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008469	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	GO:GO:0019919	GO:GO:0032259	GO:GO:0034969
GO:GO:0035242	UniProt:I1NCV3	InterPro:IPR025799	EnsemblPlants:KRG89089	ProteinID:KRG89089	ProteinID:KRG89089.1
PFAM:PF06325	PFscan:PS51678	PANTHER:PTHR11006	PANTHER:PTHR11006:SF70	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
UniParc:UPI000233DC41	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:31339..40906

Molecular Weight (calculated)

46157.4 Da

IEP (calculated)

6.227

GRAVY (calculated)

-0.361

Length

406 amino acids

Sequence
(BLAST)

001: MFPQENHSNG YQHQQGYSHR ERVRRGTCRS RASTSSHSHS VRVYDQPRPP CTDFDVAYFH SYAHLGIHQE MIKDRVRTDT YRDAIMQHQS FIAGKVVVDV
101: GCGTGILSIF CAQAGAKRVY AIDASDIALQ ANEVVKANNL SDVVVVLHGR VEDVEINEEV DVIISEWMGY MLLYESMLGS VINARDRWLK PGGLILPSSS
201: TLYMAPVTHT DRYSDSVDFW RNVYGIDMSA MVSLAKQCAF EEPSVETITG ENVLTWPHVV KYIDSYSVTI QELESVTAKF KFNSMMRAPL HGFAFWFDVE
301: FNGHAIPSTN YHSTTSFVDN HQMNGSQRKR RTNPNEALVL STAPEDPPTH WQQTLIYFYD PIELEQDQLI EGLVTLSQSK ENARFMNIHL EYTSGGRSYV
401: KESVMR

Best Arabidopsis Sequence Match ( AT3G20020.1 )
(BLAST)

001: MQSGGDFSNG FHGDHHRELE LEDKQGPSLS SFGRAKKRSH AGARDPRGGL ANVLRVSDQL GEHKSLETSE SSPPPCTDFD VAYFHSYAHV GIHEEMIKDR
101: ARTETYREAI MQHQSLIEGK VVVDVGCGTG ILSIFCAQAG AKRVYAVDAS DIAVQAKEVV KANGLSDKVI VLHGRVEDVE IDEEVDVIIS EWMGYMLLYE
201: SMLGSVITAR DRWLKPGGLI LPSHATLYMA PISHPDRYSH SIDFWRNVYG IDMSAMMQLA KQCAFEEPSV ESISGENVLT WPEVVKHIDC KTIKIQELDS
301: VTARYKFNSM MRAPMHGFAF WFDVEFSGPA SSPAKNTSET SIASGSSSIS PSGEVNQKKR TNPSDALVLS TSPESPPTHW QQTIVYFYDP IDVEQDQVIE
401: GSVTLSQSKE NKRFMNIHLE YSSAGRSFVK ESVMR

Arabidopsis Description

ATPRMT6PRMT6 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.