Factsheet for Solyc04g008860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17553	Soybean	cytosol	16.24	81.4
VIT_10s0071g00750.t01	Wine grape	cytosol	70.53	73.43
KRG89089	Soybean	nucleus	69.14	73.4
Bra035822.1-P	Field mustard	cytosol	71.0	71.66
CDY36064	Canola	cytosol	71.0	71.66
CDY25372	Canola	cytosol	70.77	71.43
CDX82265	Canola	cytosol	70.07	71.06
CDY24566	Canola	cytosol	70.3	70.96
GSMUA_AchrUn_...	Banana	cytosol, vacuole	8.35	70.59
Bra001772.1-P	Field mustard	cytosol	70.07	69.59
GSMUA_AchrUn_...	Banana	cytosol	38.75	69.01
KRH40914	Soybean	cytosol, plastid	40.37	67.44
AT3G20020.3	Thale cress	cytosol	67.98	66.14
TraesCS1B01G185000.1	Wheat	peroxisome	42.69	63.01
Os10t0489100-01	Rice	cytosol, nucleus	55.92	61.01
OQU91600	Sorghum	cytosol	56.84	60.79
EES11648	Sorghum	mitochondrion	54.29	60.31
Zm00001d032633_P004	Maize	mitochondrion	56.38	60.3
TraesCS1D01G172200.1	Wheat	cytosol	54.99	59.7
TraesCS1A01G171700.1	Wheat	cytosol	54.99	59.7
KRG90589	Soybean	cytosol, plastid	56.61	59.66
Zm00001d026614_P001	Maize	mitochondrion	53.36	59.43
KRH11256	Soybean	endoplasmic reticulum	42.46	59.22
TraesCS2A01G554100.1	Wheat	mitochondrion	52.67	58.06
TraesCS2B01G590000.1	Wheat	mitochondrion	51.04	57.89
TraesCS2D01G560200.1	Wheat	mitochondrion	52.67	57.76
HORVU1Hr1G044440.3	Barley	plastid	55.22	56.26
Os04t0677066-00	Rice	nucleus	50.81	55.73
HORVU2Hr1G119480.1	Barley	cytosol	45.71	52.12
GSMUA_Achr5P10850_001	Banana	cytosol, golgi, plastid	37.59	49.09
CDY33443	Canola	cytosol, endoplasmic reticulum, peroxisome	29.0	49.02
GSMUA_Achr5P10840_001	Banana	cytosol	49.42	48.74
Solyc07g032240.2.1	Tomato	cytosol	32.48	37.33
CDY42226	Canola	endoplasmic reticulum, extracellular	12.53	37.24
Solyc08g067050.2.1	Tomato	cytosol	30.63	35.58
Solyc12g008760.1.1	Tomato	cytosol	31.79	34.6
Solyc12g099560.1.1	Tomato	extracellular	26.91	22.22
Solyc05g054240.2.1	Tomato	cytosol	26.91	22.01
Solyc01g096550.2.1	Tomato	cytosol	30.86	21.28

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.1	InterPro:Arg_MeTrfase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0006479	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008469
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	GO:GO:0019919
GO:GO:0032259	GO:GO:0034969	GO:GO:0035242	InterPro:IPR025799	UniProt:K4BP42	PFAM:PF06325
PFscan:PS51678	PANTHER:PTHR11006	PANTHER:PTHR11006:SF70	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	EnsemblPlantsGene:Solyc04g008860.2
EnsemblPlants:Solyc04g008860.2.1	UniParc:UPI0002767328	SEG:seg	:	:	:

Description

Probable protein arginine N-methyltransferase 6 [Source:Projected from Arabidopsis thaliana (AT3G20020) UniProtKB/Swiss-Prot;Acc:Q08A71]

Coordinates

chr4:-:2475731..2485874

Molecular Weight (calculated)

48424.1 Da

IEP (calculated)

5.435

GRAVY (calculated)

-0.417

Length

431 amino acids

Sequence
(BLAST)

001: MLQPTDGGYT NGYHHDGAVA GGISGGHRVR RGSRGRPRGR RGGGGSSDGD ARVSLGQQHN EDEEEREKPA PPCTEFDTAY FNSYAHVGIH EEMIKDRVRT
101: DTYRNAIFQH QHFIAGKVVV DVGCGTGILS IFCAQAGARR VYAVDASDIA VQANEIVKAN NLCDKVIVLH GRVEDVEIDE EVDIIVSEWM GYMLLYESML
201: GSVITARDRW LKPGGLILPS HATLYMAPVT HPDRYSESVD FWRNVYGIDM SAIMPLAKQC AFEEPSVETI TVENVLTWPQ VVKHVDCYKV TTQELESITS
301: RFRFESMMRS PFHGFAFWFD VEFTGPRVFP LDNGMRPSFV EPSNSNMMED NQRKKRPNPN DALVLSTAPE DPPTHWQQTL VYFYEPLDVE QDQVIEGSLT
401: LSQSKENARF MNIHLAYSSG GRSFVKESVM R

Best Arabidopsis Sequence Match ( AT3G20020.1 )
(BLAST)

001: MQSGGDFSNG FHGDHHRELE LEDKQGPSLS SFGRAKKRSH AGARDPRGGL ANVLRVSDQL GEHKSLETSE SSPPPCTDFD VAYFHSYAHV GIHEEMIKDR
101: ARTETYREAI MQHQSLIEGK VVVDVGCGTG ILSIFCAQAG AKRVYAVDAS DIAVQAKEVV KANGLSDKVI VLHGRVEDVE IDEEVDVIIS EWMGYMLLYE
201: SMLGSVITAR DRWLKPGGLI LPSHATLYMA PISHPDRYSH SIDFWRNVYG IDMSAMMQLA KQCAFEEPSV ESISGENVLT WPEVVKHIDC KTIKIQELDS
301: VTARYKFNSM MRAPMHGFAF WFDVEFSGPA SSPAKNTSET SIASGSSSIS PSGEVNQKKR TNPSDALVLS TSPESPPTHW QQTIVYFYDP IDVEQDQVIE
401: GSVTLSQSKE NKRFMNIHLE YSSAGRSFVK ESVMR

Arabidopsis Description

ATPRMT6PRMT6 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.