Factsheet for Solyc12g099560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plastid 3
cytosol 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012001	Potato	plastid	97.89	98.08
Solyc05g054240.2.1	Tomato	cytosol	79.12	78.37
VIT_05s0020g01540.t01	Wine grape	cytosol, plastid	72.03	71.62
KRH02253	Soybean	cytosol	71.84	70.09
GSMUA_Achr11P...	Banana	cytosol	61.69	69.55
KRH50844	Soybean	cytosol	70.69	68.84
CDX86257	Canola	cytosol, plastid	68.77	68.64
KRH12054	Soybean	cytosol	71.07	68.2
Bra037440.1-P	Field mustard	cytosol, plastid	68.01	68.14
KRH37109	Soybean	cytosol	69.92	67.97
CDX85389	Canola	cytosol	68.01	67.88
CDY33934	Canola	cytosol	68.39	67.49
Bra029611.1-P	Field mustard	cytosol	68.39	67.23
Bra020667.1-P	Field mustard	cytosol	68.39	67.11
CDY24659	Canola	cytosol	68.2	66.92
AT5G49020.1	Thale cress	cytosol	67.62	66.86
CDY05299	Canola	cytosol	67.62	66.6
CDY05647	Canola	cytosol	67.43	66.54
AT3G06930.2	Thale cress	cytosol	67.43	65.79
Os07t0671700-01	Rice	plasma membrane	65.52	64.77
GSMUA_Achr11P...	Banana	cytosol	66.28	64.07
EER97694	Sorghum	cytosol	65.71	63.52
TraesCS2B01G133300.3	Wheat	cytosol	64.94	63.48
TraesCS2A01G114100.1	Wheat	cytosol	65.13	63.43
HORVU2Hr1G019780.1	Barley	cytosol, mitochondrion	62.84	61.77
TraesCS2D01G114900.1	Wheat	cytosol	64.94	61.3
Zm00001d007133_P002	Maize	cytosol	63.98	60.95
Bra015140.1-P	Field mustard	mitochondrion	21.65	46.31
CDY27881	Canola	mitochondrion	21.65	46.31
Zm00001d022469_P001	Maize	plasma membrane	66.28	32.46
Solyc07g032240.2.1	Tomato	cytosol	22.22	30.93
Solyc08g067050.2.1	Tomato	cytosol	19.92	28.03
Solyc12g008760.1.1	Tomato	cytosol	21.26	28.03
Solyc04g008860.2.1	Tomato	nucleus	22.22	26.91
CDY51773	Canola	nucleus	36.02	20.96
Solyc01g096550.2.1	Tomato	cytosol	21.46	17.92

Protein Annotations

MapMan:12.3.4.2	Gene3D:2.70.160.11	Gene3D:3.40.50.150	InterPro:Arg_MeTrfase	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006355	GO:GO:0006464	GO:GO:0006479	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008469	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538
GO:GO:0019919	GO:GO:0032259	GO:GO:0034969	GO:GO:0035242	InterPro:IPR025799	UniProt:K4DHX7
PFAM:PF06325	PFscan:PS51678	PANTHER:PTHR11006	PANTHER:PTHR11006:SF10	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
EnsemblPlantsGene:Solyc12g099560.1	EnsemblPlants:Solyc12g099560.1.1	UniParc:UPI000276A850	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:66663388..66672365

Molecular Weight (calculated)

58472.4 Da

IEP (calculated)

5.215

GRAVY (calculated)

-0.204

Length

522 amino acids

Sequence
(BLAST)

001: MEENQKQQQF LVSSVSELTS SSSSLFSKTE PVFARFSLDS GLPELRFGQG AELSDAVVFN VKISQLFKLG PVESLCVSEA NKEKSHSRGI SIQFRNEEES
101: RAFHCAFEQW KKEVVVEECS LNNGAVSTSK SKFDDKIEAS SAKMYFHYYG QLLHQQNMLQ DFVRTGTYYS AVIENRADFL GRIVVDVGAG SGILSLFAAQ
201: AGAKHVYAIE ASEMADYARQ LIAGNPSLND RITVIKGKVE DVELPEKADI LISEPMGTLL VNERMLESYV IARDRFLVQN GKMFPGVGRI HMAPFSDEYL
301: YMEIANKATF WQQQNYFGVD LTPLHGSAYQ GYFSQPVVDA FDSRLLVAPA VSHVINFSSV KEEDLYEIDV PLRFLSTVST RIHGLACWFD VLFNGSTVQR
401: WLTTAPGAPT THWYQLRCVL PQPLYVMPGQ EITGRLHLVA HKAQSYTIYL TLSALVGDML QTSSVKLDLK EPYYRMSQPQ SYSAAQDQNP SQLLQSDMQF
501: PSRDDDGSIL MQPPSPNELH SL

Best Arabidopsis Sequence Match ( AT3G06930.2 )
(BLAST)

001: MEVSSVKKLE QLEYSLESVT DLSSSSVSSS SPAVATFSYV DGVTELRFLQ SDSTHCFNFD LASAQLFKLG PVHFICVSDG SSSSEEKSFS KGVNIKFKNE
101: KDSKDFCESF EEWRNDSVVQ GSSLQNGTVS ANKSKFDNKI EASSAKMYFH YYGQLLHQQN MLQDYVRTGT YYAAVMENHS DFAGRVVVDV GAGSGILSMF
201: AAQAGAKHVY AVEASEMAEY ARKLIAGNPL FADRITVIKG KVEDIELPEK ADILISEPMG TLLVNERMLE SYVIARDRFM TPKGKMFPTV GRIHMAPFSD
301: EFLFIEMANK AMFWQQQNYY GVDLTPLYGS AHQGYFSQPV VDAFDPRLLV ASPMFHMIDF TQMKEEDFYE IDIPLKFTAS MCTRMHGLAC WFDVLFDGST
401: VQRWLTTAPG APTTHWYQIR CVLSQPIYVM AGQEITGRLH LIAHSAQSYT IDLTLSAKMW GPGASQGGIL QSSTCKFDLK EPYYRMSQPQ AYPVAQEPPL
501: QPQPELSTQQ DIQTPNDELE EELLQQLPQN PSAQL

Arabidopsis Description

PRMT13Probable histone-arginine methyltransferase 1.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84W92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.