Factsheet for VIT_05s0020g01540.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021779	Potato	cytosol	60.57	77.37
KRH02253	Soybean	cytosol	76.19	74.77
KRH50844	Soybean	cytosol	76.0	74.44
Solyc12g099560.1.1	Tomato	extracellular	71.62	72.03
CDX86257	Canola	cytosol, plastid	71.62	71.89
PGSC0003DMT400012001	Potato	plastid	71.24	71.78
KRH37109	Soybean	cytosol	73.33	71.69
Solyc05g054240.2.1	Tomato	cytosol	71.81	71.54
CDX85389	Canola	cytosol	71.24	71.51
KRH12054	Soybean	cytosol	74.1	71.51
GSMUA_Achr11P...	Banana	cytosol	63.05	71.49
Bra037440.1-P	Field mustard	cytosol, plastid	70.67	71.21
AT5G49020.1	Thale cress	cytosol	71.43	71.02
Bra029611.1-P	Field mustard	cytosol	71.24	70.43
CDY33934	Canola	cytosol	70.86	70.32
CDY24659	Canola	cytosol	71.24	70.3
AT3G06930.2	Thale cress	cytosol	71.43	70.09
CDY05299	Canola	cytosol	70.48	69.81
CDY05647	Canola	cytosol	70.1	69.57
Bra020667.1-P	Field mustard	cytosol	70.48	69.55
GSMUA_Achr11P...	Banana	cytosol	69.9	67.96
Os07t0671700-01	Rice	plasma membrane	67.43	67.05
EER97694	Sorghum	cytosol	67.05	65.19
TraesCS2A01G114100.1	Wheat	cytosol	65.52	64.18
TraesCS2B01G133300.3	Wheat	cytosol	65.14	64.04
Zm00001d007133_P002	Maize	cytosol	66.48	63.69
HORVU2Hr1G019780.1	Barley	cytosol, mitochondrion	63.43	62.71
TraesCS2D01G114900.1	Wheat	cytosol	65.33	62.03
CDY27881	Canola	mitochondrion	22.29	47.95
Bra015140.1-P	Field mustard	mitochondrion	22.29	47.95
Zm00001d022469_P001	Maize	plasma membrane	67.05	33.02
VIT_11s0016g02530.t01	Wine grape	cytosol	21.52	32.29
VIT_11s0016g04830.t01	Wine grape	cytosol	20.38	31.75
VIT_10s0071g00750.t01	Wine grape	cytosol	21.71	27.54
CDY51773	Canola	nucleus	36.95	21.63
VIT_13s0084g00650.t01	Wine grape	cytosol	22.67	18.92

Protein Annotations

EntrezGene:100245917	wikigene:100245917	MapMan:12.3.4.2	Gene3D:2.70.160.11	Gene3D:3.40.50.150	InterPro:Arg_MeTrfase
ProteinID:CBI26080	ProteinID:CBI26080.3	UniProt:D7T6F9	EMBL:FN595749	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006355	GO:GO:0006464	GO:GO:0006479	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008469	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0016787	GO:GO:0019538	GO:GO:0019919	GO:GO:0032259	GO:GO:0034969
GO:GO:0035242	GO:GO:0090305	InterPro:IPR025799	EntrezGene:LOC100245917	wikigene:LOC100245917	PFAM:PF06325
PFscan:PS51678	PANTHER:PTHR11006	PANTHER:PTHR11006:SF10	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI0001983260
ArrayExpress:VIT_05s0020g01540	EnsemblPlantsGene:VIT_05s0020g01540	EnsemblPlants:VIT_05s0020g01540.t01	unigene:Vvi.22771	RefSeq:XP_002273923	RefSeq:XP_002273923.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:3203156..3217647

Molecular Weight (calculated)

58549.7 Da

IEP (calculated)

5.333

GRAVY (calculated)

-0.171

Length

525 amino acids

Sequence
(BLAST)

001: MEVSLGHKRK QQEFSLVSIS HLSPSSSSTS PSPPVVACFS AASLELRFQQ DSDSSDVIKF DLQAAQVFKL SPVQSVCISE GSEAAKEKSY SRGIVIEFNN
101: EEQSKAFYCA FEQWKKEAFV QEAQLPNGTV STSKSKFDDK IEASSAKMYF HYYGQLLHQQ NMLQDYVRTG TYFAAVIENR TDFTGRVVVD VGAGSGILSL
201: FAAQAGAKHV YAVEASEMAE YARKLIAGNP SLGKRITVVK GKVEDVELPE KADILISEPM GTLLVNERML ESYVIARDRF LIPDGKMFPG IGRIHMAPFS
301: DEYLFIEIAN KALFWQQQSY YGVDLTPLYG SAFQGYFSQP VVDAFDPRLL VAPSISHTID FAKIKEEELY EIEIPLKFIS LVGARVHGLA CWFDVLFNGS
401: TVQRWLTTAP GAPTTHWYQL RCVLLQPLYV MAGQEITGQL RLVAHNAQSY TIHLTMGVKM WGPGAEQGEV LQSSSCKLDL KEPYYRMSQP QAYTVAPDQQ
501: QHPLIHAQDI HIQGQDADEP DVELQ

Best Arabidopsis Sequence Match ( AT3G06930.1 )
(BLAST)

001: MEVSSVKKLE QLEYSLESVT DLSSSSVSSS SPAVATFSYV DGVTELRFLQ SDSTHCFNFD LASAQLFKLG PVHFICVSDG SSSSEEKSFS KGVNIKFKNE
101: KDSKDFCESF EEWRNDSVVQ GSSLQNGTVS ANKSKFDNKI EASSAKMYFH YYGQLLHQQN MLQDYVRTGT YYAAVMENHS DFAGRVVVDV GAGSGILSMF
201: AAQAGAKHVY AVEASEMAEY ARKLIAGNPL FADRITVIKG KVEDIELPEK ADILISEPMG TLLVNERMLE SYVIARDRFM TPKGKMFPTV GRIHMAPFSD
301: EFLFIEMANK AMFWQQQNYY GVDLTPLYGS AHQGYFSQPV VDAFDPRLLV ASPMFHMIDF TQMKEEDFYE IDIPLKFTAS MCTRMHGLAC WFDVLFDGST
401: VQRWLTTAPG APTTHWYQIR CVLSQPIYVM AGQEITGRLH LIAHSAQSYT IDLTLSAKMW GPGASQGGIL QSSTCKFDLK EPYYRMSQPQ AYPVAQEPPL
501: QPQPELSTQD IQTPNDELEE ELLQQLPQNP SAQL

Arabidopsis Description

PRMT13Probable histone-arginine methyltransferase 1.3 [Source:UniProtKB/Swiss-Prot;Acc:Q84W92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.