CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021779	Potato	cytosol	19.62	42.82
GSMUA_Achr11P...	Banana	cytosol	20.51	39.74
CDX85389	Canola	cytosol	22.85	39.2
CDX86257	Canola	cytosol, plastid	22.41	38.43
AT3G06930.2	Thale cress	cytosol	22.85	38.32
CDY24659	Canola	cytosol	22.63	38.16
CDY05299	Canola	cytosol	22.52	38.11
KRH50844	Soybean	cytosol	22.63	37.87
CDY33934	Canola	cytosol	22.3	37.81
KRH02253	Soybean	cytosol	22.52	37.76
CDY05647	Canola	cytosol	22.07	37.43
VIT_05s0020g01540.t01	Wine grape	cytosol, plastid	21.63	36.95
Os07t0671700-01	Rice	plasma membrane	21.63	36.74
Solyc12g099560.1.1	Tomato	extracellular	20.96	36.02
TraesCS2B01G133300.3	Wheat	cytosol	21.29	35.77
KRH37109	Soybean	cytosol	21.4	35.75
EER97694	Sorghum	cytosol	21.52	35.74
PGSC0003DMT400012001	Potato	plastid	20.74	35.7
Solyc05g054240.2.1	Tomato	cytosol	20.96	35.67
KRH12054	Soybean	cytosol	21.63	35.66
TraesCS2A01G114100.1	Wheat	cytosol	21.29	35.63
HORVU2Hr1G019780.1	Barley	cytosol, mitochondrion	21.07	35.59
GSMUA_Achr11P...	Banana	cytosol	21.29	35.37
TraesCS2D01G114900.1	Wheat	cytosol	21.29	34.54
Zm00001d007133_P002	Maize	cytosol	21.07	34.49
CDY27881	Canola	mitochondrion	8.81	32.38
CDY14208	Canola	cytosol	9.03	24.62
CDY66138	Canola	cytosol, peroxisome, plastid	10.14	23.7
CDY35877	Canola	cytosol	9.59	23.69
CDY30213	Canola	cytosol	10.26	23.53
CDY47762	Canola	cytosol	10.14	23.45
CDY25372	Canola	cytosol	11.15	23.42
CDY24566	Canola	cytosol	11.15	23.42
CDY36064	Canola	cytosol	11.15	23.42
CDX82265	Canola	cytosol	10.93	23.06
CDX82711	Canola	cytosol	9.25	22.99
CDY06802	Canola	cytosol	9.92	22.88
CDY43510	Canola	cytosol	9.92	22.82
CDY33443	Canola	cytosol, endoplasmic reticulum, peroxisome	6.24	21.96
CDY03574	Canola	cytosol	7.02	21.95
CDY00764	Canola	cytosol	13.38	20.87
CDY08441	Canola	cytosol	13.82	20.77
CDY42226	Canola	endoplasmic reticulum, extracellular	3.34	20.69
CDX73828	Canola	cytosol	13.6	20.44
CDY71180	Canola	cytosol	5.24	20.43
CDY42140	Canola	cytosol	13.04	19.86
Zm00001d022469_P001	Maize	plasma membrane	21.63	18.2
CDY49141	Canola	nucleus	5.35	17.08
CDY71161	Canola	cytosol	2.34	14.38

Protein Annotations

Gene3D:2.70.160.11	Gene3D:3.40.140.10	Gene3D:3.40.50.150	MapMan:35.1	GO:A0A078IRQ2	UniProt:A0A078IRQ2
InterPro:Arg_MeTrfase	EnsemblPlants:CDY51773	ProteinID:CDY51773	ProteinID:CDY51773.1	ncoils:Coil	InterPro:Coilin_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006479	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00004207001
InterPro:IPR025799	PFAM:PF06325	PFAM:PF15862	PFscan:PS51678	PANTHER:PTHR11006	PANTHER:PTHR11006:SF10
InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI0004EE3C97	SEG:seg	:	:

Description

BnaC05g49560DBnaC05g49560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRQ2]

Coordinates

chrLK033025:-:52260..58227

Molecular Weight (calculated)

99893.0 Da

IEP (calculated)

7.794

GRAVY (calculated)

-0.386

Length

897 amino acids

Sequence
(BLAST)

001: MRGVLRPASD AYKSSATHMI IIRLHLFRLW SQSAGEGEGV RLLFEDQRVP SKCRKKQGLK RSWVVLDPKR HPTVSEFSDH LLCLFEACPH GISLSMDGFV
101: LPPFESSRVL KDKDIVWRKK CKLAATEESP VERENEAVVS KGNAVKKRKK SDAQRTENDE QNVVNAKPKT KSKKSSQQAE SEEPNEQCNM SGETKKTPSR
201: SARLKKAKRQ WLREKTKQEK EEIQQKQVVV APSQKPAFTT NHRVTKENRS EALETQQPDE SGDGVGDEVV PVEVRPGQNQ DCACSQVVES KSLEQLRYHR
301: SSQVSTLQAS DQTATNPKLS TNNGLQTPVK EKETLKASSC ADSQIAASSS ASLLALVATP FESTSSQILS VSRLISGSES TSSSSRIGAL RFNIQQNLIE
401: DNVRAGAYYA SVMENKLDFS GCVVLHVGAG SGVLALCAAQ AGAKHVYLVE ASEYALKLID ENPTLSELIT VIEGNVEDVA LPEKPDVLIS EPLGMHFTHG
501: FNERGLKSYV IARDRFISPN GKMLGKMFPS AGRIHIAPFT DEFLFTEMAN KPVVDGFDKS LLVAHPMIHT IDFTQKKEGD FYVMDMPLLF ISSTSTMVHG
601: LALWFEVLLD GSVDKRWIKT SPRAPTTDCF RIRCVFPHAI DVVIGQSITG RARFEALTDQ SYTIDITLTA EMFGRGGSKI GYQSYKSKFE LCQAQQVTPL
701: PPKDETEDDW YSQFQYGAED NFHGFFIPWD LLQRFLSAED AKSSMVVGIL VGTEQHKVTH ILLPPQWSRQ GELHISDIPL EDMHLQGTTL IGYLRTEASC
801: EITPPTAADV RFLSKHFGKE AIVGICSSRS TPPSMAFYKL TEEAFVATSW KLDEKTSVLF LVPRGGIWNY NTCVNNRWKN MPYRLRVSSL PKAYLGC

Best Arabidopsis Sequence Match ( AT1G13030.1 )
(BLAST)

001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI

Arabidopsis Description

COILCoilin [Source:UniProtKB/Swiss-Prot;Acc:Q8RWK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.