CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03574
CDY06802
CDY14208
CDY30213
CDY43510
CDY47762

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29510.1	CDY03574	AT4G29510.1	17666011
AT4G29510.1	CDY06802	AT4G29510.1	17666011
AT4G29510.1	CDY14208	AT4G29510.1	17666011
AT4G29510.1	CDY30213	AT4G29510.1	17666011
AT4G29510.1	CDY43510	AT4G29510.1	17666011
AT4G29510.1	CDY47762	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03574	Canola	cytosol	72.34	82.93
Zm00001d020188_P001	Maize	extracellular	72.34	77.78
CDY30213	Canola	cytosol	89.97	75.7
CDY47762	Canola	cytosol	89.06	75.52
CDY43510	Canola	cytosol	88.15	74.36
CDY06802	Canola	cytosol	87.84	74.29
AT4G29510.1	Thale cress	cytosol	86.02	72.56
Bra010325.1-P	Field mustard	cytosol	37.08	70.93
CDX82711	Canola	cytosol	77.81	70.91
CDY35877	Canola	cytosol	77.2	69.97
VIT_11s0016g02530.t01	Wine grape	cytosol	73.56	69.14
KRH74166	Soybean	nucleus	74.77	65.43
KRH49040	Soybean	nucleus	74.47	64.64
EER98789	Sorghum	cytosol	74.77	64.06
TraesCS5A01G196000.2	Wheat	cytosol	73.56	63.68
TraesCS5B01G187400.1	Wheat	cytosol	73.56	63.68
Os09t0359800-01	Rice	cytosol	74.77	63.57
TraesCS5D01G195000.1	Wheat	cytosol	73.25	63.42
HORVU5Hr1G056790.7	Barley	cytosol	73.56	63.19
Solyc07g032240.2.1	Tomato	cytosol	70.52	61.87
GSMUA_Achr6P22570_001	Banana	cytosol	72.64	61.6
PGSC0003DMT400000915	Potato	cytosol	72.64	60.35
Solyc12g008760.1.1	Tomato	cytosol	72.64	60.35
PGSC0003DMT400021726	Potato	cytosol	71.12	58.65
CDY24566	Canola	cytosol	37.99	29.27
CDY25372	Canola	cytosol	37.69	29.04
CDY36064	Canola	cytosol	37.08	28.57
CDX82265	Canola	cytosol	36.78	28.47
CDY66138	Canola	cytosol, peroxisome, plastid	31.61	27.08
CDY33443	Canola	cytosol, endoplasmic reticulum, peroxisome	19.45	25.1
CDY27881	Canola	mitochondrion	15.81	21.31
CDY42140	Canola	cytosol	35.26	19.69
CDY00764	Canola	cytosol	34.35	19.65
CDY08441	Canola	cytosol	35.56	19.6
CDX85389	Canola	cytosol	31.0	19.5
CDX86257	Canola	cytosol, plastid	30.7	19.31
CDX73828	Canola	cytosol	34.35	18.93
CDY05647	Canola	cytosol	30.4	18.9
CDY33934	Canola	cytosol	30.4	18.9
CDY05299	Canola	cytosol	30.09	18.68
CDY24659	Canola	cytosol	30.09	18.61
CDY42226	Canola	endoplasmic reticulum, extracellular	7.9	17.93
CDY71161	Canola	cytosol	7.9	17.81
CDY71180	Canola	cytosol	11.25	16.09
CDY51773	Canola	nucleus	24.62	9.03
CDY49141	Canola	nucleus	5.17	6.05

Protein Annotations

MapMan:12.3.4.1	Gene3D:2.70.160.11	Gene3D:3.40.50.150	GO:A0A078FPE8	UniProt:A0A078FPE8	InterPro:Arg_MeTrfase
EnsemblPlants:CDY14208	ProteinID:CDY14208	ProteinID:CDY14208.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006479	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00078772001	InterPro:IPR025799	PFAM:PF13649	PFscan:PS51678
PANTHER:PTHR11006	PANTHER:PTHR11006:SF53	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI0004EED552	SEG:seg

Description

BnaA08g13390DBnaA08g13390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPE8]

Coordinates

chrLK032041:-:186563..193654

Molecular Weight (calculated)

36614.6 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.002

Length

329 amino acids

Sequence
(BLAST)

001: MNPCATPETA PMPLTSLMIP PAPTTTSIPT LTSNVIYQNK FLIKDKVVLD VGAGTGILSL FCAKAGAAHV YAVECSQMAD MAKEIVKANG FSDVILITVL
101: KGKIEEIELP TPKVDVIISE WMGYFLLFEN MLDSVLYARN KWLVDGGVVL PDKASLFLTA IEDSEYKEDK IEFWNSVYGF DMSCIKKKAM MEPLVDTVDP
201: KQIVTDSKLL KTMNISKMSS GDASFTAPFK LVAQRNDYIH ALVAYFDVSF TMCHKLLGFS TGPKSRATHW KQTVMYLEDV LTICEGETIT GSMSVSYNKK
301: NARDVDMKLS YSLDGQHSKI SRTQHYKMR

Best Arabidopsis Sequence Match ( AT2G19670.1 )
(BLAST)

001: MTSTENNNNG SDETQTTKLH FEDADESMHD GDDNNADVAD DITSADYYFD SYSHFGIHEE MLKDVVRTKS YQDVIYKNKF LIKDKIVLDV GAGTGILSLF
101: CAKAGAAHVY AVECSQMADT AKEIVKSNGF SDVITVLKGK IEEIELPVPK VDVIISEWMG YFLLYENMLD TVLYARNKWL VDGGIVLPDK ASLYVTAIED
201: AHYKDDKVEF WDDVYGFDMS CIKRRAITEP LVDTVDGNQI VTDSKLLKTM DISKMAAGDA SFTAPFKLVA QRNDHIHALV AYFDVSFTMC HKKMGFSTGP
301: KSRATHWKQT VLYLEDVLTI CEGETITGSM TIAQNKKNPR DVDIKLSYSL NGQHCNISRT HFYKMR

Arabidopsis Description

PRMT12Probable protein arginine N-methyltransferase 1.2 [Source:UniProtKB/Swiss-Prot;Acc:O82210]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.