CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03574
CDY06802
CDY14208
CDY30213
CDY43510
CDY47762

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29510.1	CDY03574	AT4G29510.1	17666011
AT4G29510.1	CDY06802	AT4G29510.1	17666011
AT4G29510.1	CDY14208	AT4G29510.1	17666011
AT4G29510.1	CDY30213	AT4G29510.1	17666011
AT4G29510.1	CDY43510	AT4G29510.1	17666011
AT4G29510.1	CDY47762	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024143.1-P	Field mustard	cytosol	97.7	98.2
CDY47762	Canola	cytosol	96.93	97.68
CDY43510	Canola	cytosol	93.35	93.59
CDY06802	Canola	cytosol	93.09	93.57
CDY14208	Canola	cytosol	75.7	89.97
CDY03574	Canola	cytosol	65.73	89.55
AT4G29510.1	Thale cress	cytosol	88.75	88.97
CDX82711	Canola	cytosol	76.73	83.1
CDY35877	Canola	cytosol	76.73	82.64
Zm00001d020188_P001	Maize	extracellular	64.19	82.03
VIT_11s0016g02530.t01	Wine grape	cytosol	70.33	78.57
KRH74166	Soybean	nucleus	73.15	76.06
KRH49040	Soybean	nucleus	73.4	75.73
TraesCS5A01G196000.2	Wheat	cytosol	71.61	73.68
TraesCS5B01G187400.1	Wheat	cytosol	71.61	73.68
TraesCS5D01G195000.1	Wheat	cytosol	71.36	73.42
Os09t0359800-01	Rice	cytosol	72.38	73.13
HORVU5Hr1G056790.7	Barley	cytosol	71.61	73.11
EER98789	Sorghum	cytosol	71.36	72.66
Solyc07g032240.2.1	Tomato	cytosol	69.57	72.53
PGSC0003DMT400000915	Potato	cytosol	72.38	71.46
GSMUA_Achr6P22570_001	Banana	cytosol	70.59	71.13
Solyc12g008760.1.1	Tomato	cytosol	71.87	70.96
PGSC0003DMT400021726	Potato	cytosol	70.59	69.17
CDY24566	Canola	cytosol	36.32	33.26
CDY25372	Canola	cytosol	36.06	33.02
CDX82265	Canola	cytosol	35.81	32.94
CDY36064	Canola	cytosol	35.81	32.79
CDY66138	Canola	cytosol, peroxisome, plastid	29.67	30.21
CDY33443	Canola	cytosol, endoplasmic reticulum, peroxisome	19.44	29.8
CDY27881	Canola	mitochondrion	16.37	26.23
CDY00764	Canola	cytosol	33.76	22.96
CDY08441	Canola	cytosol	34.78	22.78
CDY42140	Canola	cytosol	34.27	22.75
CDX85389	Canola	cytosol	30.18	22.56
CDX86257	Canola	cytosol, plastid	29.92	22.37
CDX73828	Canola	cytosol	33.76	22.11
CDY42226	Canola	endoplasmic reticulum, extracellular	8.18	22.07
CDY33934	Canola	cytosol	29.67	21.93
CDY05647	Canola	cytosol	29.67	21.93
CDY71180	Canola	cytosol	12.79	21.74
CDY05299	Canola	cytosol	29.16	21.51
CDY24659	Canola	cytosol	29.16	21.43
CDY71161	Canola	cytosol	6.65	17.81
CDY49141	Canola	nucleus	8.7	12.1
CDY51773	Canola	nucleus	23.53	10.26

Protein Annotations

MapMan:12.3.4.1	Gene3D:2.70.160.11	Gene3D:3.40.50.150	GO:A0A078H047	UniProt:A0A078H047	InterPro:Arg_MeTrfase
EnsemblPlants:CDY30213	ProteinID:CDY30213	ProteinID:CDY30213.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006479	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00044824001	InterPro:IPR025799	PFAM:PF06325	PFscan:PS51678
PANTHER:PTHR11006	PANTHER:PTHR11006:SF53	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335	UniParc:UPI0004EF2A53	SEG:seg

Description

BnaA03g49570DBnaA03g49570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H047]

Coordinates

chrLK032250:-:329915..332046

Molecular Weight (calculated)

44136.5 Da

IEP (calculated)

4.744

GRAVY (calculated)

-0.296

Length

391 amino acids

Sequence
(BLAST)

001: MTKKNNNNNE EEEEFVSFGH NLNTKIRFED ADEDETAQGS AEAATAQDEP MCDAADITTD AADDTTSADY YFDSYSHFGL YLLQEMLKDV VRTKTYQNVI
101: YQNKFLIKDK VVLDVGAGTG ILSLFCAKAG AKHVYAVECS QMADMAKEIV KANGFSDVIT VLKGKIEEIE LPTPKVDVII SEWMGYFLLF ENMLDSVLYA
201: RNKWLVDGGI VLPDKASLFL TAIEDSEYKE DKIEFWNSVY GFDMSCIKKK AMMEPLVDTV DQKQIVTDSR LLKTMDISKM SSGDASFTAP FKLVAQRNDY
301: IHALVAYFDV SFTMCHKLLG FSTGPKSRAT HWKQTVMYLE DVLTICEGET ITGSMSVSYN KKNPRDVDIK LSYSLDGQHS KISRTQHYKM R

Best Arabidopsis Sequence Match ( AT4G29510.1 )
(BLAST)

001: MTKNSNHDEN EFISFEPNQN TKIRFEDADE DEVAEGSGVA GEETPQDESM FDAGESADTA EVTDDTTSAD YYFDSYSHFG IHEEMLKDVV RTKTYQNVIY
101: QNKFLIKDKI VLDVGAGTGI LSLFCAKAGA AHVYAVECSQ MADMAKEIVK ANGFSDVITV LKGKIEEIEL PTPKVDVIIS EWMGYFLLFE NMLDSVLYAR
201: DKWLVEGGVV LPDKASLHLT AIEDSEYKED KIEFWNSVYG FDMSCIKKKA MMEPLVDTVD QNQIVTDSRL LKTMDISKMS SGDASFTAPF KLVAQRNDYI
301: HALVAYFDVS FTMCHKLLGF STGPKSRATH WKQTVLYLED VLTICEGETI TGTMSVSPNK KNPRDIDIKL SYSLNGQHCK ISRTQHYKMR

Arabidopsis Description

PRMT11Protein arginine N-methyltransferase 1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.