Factsheet for Solyc12g008760.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g025270.2.1
Solyc07g032240.2.1
Solyc12g008760.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19670.1	Solyc03g025270.2.1	AT4G25630.1	17666011
AT4G29510.1	Solyc03g025270.2.1	AT4G25630.1	17666011
AT4G29510.1	Solyc07g032240.2.1	AT4G29510.1	17666011
AT4G29510.1	Solyc12g008760.1.1	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000915	Potato	cytosol	97.73	97.73
Solyc07g032240.2.1	Tomato	cytosol	83.08	87.73
Zm00001d020188_P001	Maize	extracellular	64.9	83.99
VIT_11s0016g02530.t01	Wine grape	cytosol	73.99	83.71
KRH49040	Soybean	nucleus	75.0	78.36
KRH74166	Soybean	nucleus	73.99	77.93
CDX82711	Canola	cytosol	69.7	76.45
Bra039010.1-P	Field mustard	cytosol	69.95	76.31
TraesCS5D01G195000.1	Wheat	cytosol	72.98	76.05
CDY35877	Canola	cytosol	69.7	76.03
TraesCS5B01G187400.1	Wheat	cytosol	72.73	75.79
TraesCS5A01G196000.2	Wheat	cytosol	72.73	75.79
HORVU5Hr1G056790.7	Barley	cytosol	72.98	75.46
EER98789	Sorghum	cytosol	72.73	75.0
GSMUA_Achr6P22570_001	Banana	cytosol	72.98	74.48
AT2G19670.1	Thale cress	cytosol	68.69	74.32
CDY06802	Canola	cytosol	72.98	74.29
AT4G29510.1	Thale cress	cytosol	72.73	73.85
Bra011118.1-P	Field mustard	cytosol	72.73	73.85
CDY43510	Canola	cytosol	72.73	73.85
Os09t0359800-01	Rice	cytosol	71.46	73.13
Bra024143.1-P	Field mustard	cytosol	71.72	73.01
CDY14208	Canola	cytosol	60.35	72.64
CDY47762	Canola	cytosol	70.96	72.42
Bra010325.1-P	Field mustard	cytosol	31.31	72.09
CDY30213	Canola	cytosol	70.96	71.87
CDY03574	Canola	cytosol	51.77	71.43
Solyc04g008860.2.1	Tomato	nucleus	34.6	31.79
Solyc08g067050.2.1	Tomato	cytosol	28.79	30.73
Solyc01g096550.2.1	Tomato	cytosol	34.6	21.92
Solyc05g054240.2.1	Tomato	cytosol	29.04	21.82
Solyc12g099560.1.1	Tomato	extracellular	28.03	21.26

Protein Annotations

MapMan:12.3.4.1	Gene3D:2.70.160.11	Gene3D:3.40.50.150	InterPro:Arg_MeTrfase	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006355	GO:GO:0006464	GO:GO:0006479	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008469	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538
GO:GO:0019919	GO:GO:0032259	GO:GO:0034969	GO:GO:0035242	InterPro:IPR025799	UniProt:K4DBW4
PFAM:PF06325	PFscan:PS51678	PANTHER:PTHR11006	PANTHER:PTHR11006:SF53	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
EnsemblPlantsGene:Solyc12g008760.1	EnsemblPlants:Solyc12g008760.1.1	UniParc:UPI00027696CB	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:2116904..2120908

Molecular Weight (calculated)

44696.1 Da

IEP (calculated)

4.596

GRAVY (calculated)

-0.231

Length

396 amino acids

Sequence
(BLAST)

001: MDSVSNNEIE NSASYGKNQS KIKFQYEDDD EQVVQDEAVT ESSNLEVDED ISMCDPTTTA AAVDESMVGG DKTSADYYFD SYSHFGIHEE MLKDVVRTKT
101: YQNVIYKNSF LFKDKVVLDV GAGTGILSLF CAKVGAKHVY AIECSSMADT AQEIVKLNGF SDVITVIKGK VEEIDLPVPQ VDIIISEWMG YFLLYENMLD
201: TVLYARDKWL VKDGVVLPDK ASLYLTAIED ADYKEDKIEF WNSVYGFDMS CIRKQAMMEP IVDTVDQNQI VTNCQLLKTM DISKMTSGDA SFTAPFKLIA
301: ERDDYIHALV AYFDVSFTKC HKLLGFSTGP KSRSTHWKQT VLYLEDVITV CHGEAVVGSM TVAPNKKNPR DVDIMLKYSV NGKHCRVSRT QYYRMR

Best Arabidopsis Sequence Match ( AT4G29510.1 )
(BLAST)

001: MTKNSNHDEN EFISFEPNQN TKIRFEDADE DEVAEGSGVA GEETPQDESM FDAGESADTA EVTDDTTSAD YYFDSYSHFG IHEEMLKDVV RTKTYQNVIY
101: QNKFLIKDKI VLDVGAGTGI LSLFCAKAGA AHVYAVECSQ MADMAKEIVK ANGFSDVITV LKGKIEEIEL PTPKVDVIIS EWMGYFLLFE NMLDSVLYAR
201: DKWLVEGGVV LPDKASLHLT AIEDSEYKED KIEFWNSVYG FDMSCIKKKA MMEPLVDTVD QNQIVTDSRL LKTMDISKMS SGDASFTAPF KLVAQRNDYI
301: HALVAYFDVS FTMCHKLLGF STGPKSRATH WKQTVLYLED VLTICEGETI TGTMSVSPNK KNPRDIDIKL SYSLNGQHCK ISRTQHYKMR

Arabidopsis Description

PRMT11Protein arginine N-methyltransferase 1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.