Factsheet for Solyc03g025270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g032240.2.1
Solyc12g008760.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	Solyc07g032240.2.1	AT2G19670.1	17666011
AT4G25630.1	Solyc12g008760.1.1	AT2G19670.1	17666011
AT4G25630.1	Solyc07g032240.2.1	AT4G29510.1	17666011
AT4G25630.1	Solyc12g008760.1.1	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026234	Potato	nucleus	92.04	92.04
GSMUA_Achr7P04500_001	Banana	cytosol	71.34	90.69
Zm00001d013457_P001	Maize	cytosol	11.46	90.0
GSMUA_AchrUn_...	Banana	cytosol	27.39	88.66
Os02t0821800-02	Rice	nucleus	69.11	88.57
TraesCS7A01G479900.1	Wheat	cytosol	68.79	88.52
TraesCS6A01G400300.1	Wheat	nucleus	61.15	87.67
KRH63857	Soybean	nucleus	81.21	83.33
VIT_16s0050g00880.t01	Wine grape	nucleus	83.76	83.23
AT5G52470.1	Thale cress	nucleus	81.21	82.79
TraesCS7D01G467000.1	Wheat	nucleus	76.11	82.7
KRH54109	Soybean	endoplasmic reticulum	80.25	82.62
TraesCS7B01G382200.1	Wheat	nucleus	75.16	82.23
KRG97622	Soybean	nucleus	81.85	82.11
Os05t0176000-01	Rice	nucleus	80.57	81.88
CDX92724	Canola	nucleus, plastid	78.66	80.98
KRH31252	Soybean	nucleus	81.21	80.95
CDY50191	Canola	mitochondrion	80.57	80.83
AT4G25630.1	Thale cress	nucleus, plastid	82.17	80.62
Bra019148.1-P	Field mustard	cytosol	78.34	80.13
Bra010455.1-P	Field mustard	cytosol	74.2	80.07
TraesCS6D01G384500.1	Wheat	nucleus	78.66	79.94
CDY52366	Canola	nucleus	81.85	79.81
HORVU6Hr1G091860.1	Barley	plasma membrane	78.03	79.8
CDX89407	Canola	nucleus	78.34	79.35
Bra013905.1-P	Field mustard	nucleus	78.34	79.35
TraesCS6B01G440500.1	Wheat	nucleus	77.71	79.22
EES06036	Sorghum	nucleus	77.39	79.15
CDX94433	Canola	nucleus	79.62	79.11
KXG20767	Sorghum	nucleus	50.96	77.67
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	70.06	75.6
CDY27064	Canola	cytosol	70.06	75.6
HORVU7Hr1G108780.2	Barley	nucleus	77.71	75.54
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	9.55	75.0
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	63.69	74.63
CDX94434	Canola	cytosol	60.51	73.36
Zm00001d014473_P001	Maize	cytosol	23.89	66.96
Zm00001d051631_P001	Maize	cytosol	23.89	66.37
CDY27819	Canola	cytosol	42.36	66.17
AT5G52490.1	Thale cress	cytosol	57.96	62.33
TraesCS6D01G118100.1	Wheat	extracellular	22.29	58.82
TraesCS6A01G195300.1	Wheat	extracellular	21.66	57.14
Bra028311.1-P	Field mustard	cytosol	32.17	53.44
CDY00531	Canola	cytosol, nucleus, plastid	31.85	53.19
Zm00001d050515_P001	Maize	cytosol	24.2	46.06
TraesCS4B01G122500.1	Wheat	cytosol	16.56	40.0
Zm00001d051885_P001	Maize	plasma membrane, plastid	71.97	36.33
Zm00001d053525_P001	Maize	cytosol	13.06	34.45
Zm00001d049509_P001	Maize	plastid	14.65	30.87
Zm00001d049508_P002	Maize	plastid	17.83	30.77
Zm00001d036744_P001	Maize	nucleus, plastid	22.29	30.04
Zm00001d044114_P001	Maize	nucleus	14.33	30.0
Zm00001d023745_P001	Maize	nucleus	14.33	30.0
Zm00001d001875_P001	Maize	nucleus	14.33	30.0
Zm00001d037391_P001	Maize	cytosol	20.38	25.91
TraesCS2B01G578600.1	Wheat	plastid	23.89	22.66

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	InterPro:Fibrillarin	InterPro:Fibrillarin_CS	GO:GO:0000494
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005730	GO:GO:0006139
GO:GO:0006364	GO:GO:0006464	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008649	GO:GO:0009987	GO:GO:0015030	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538
GO:GO:0031167	GO:GO:0031428	GO:GO:0032040	GO:GO:1990258	GO:GO:1990259	UniProt:K4BF00
HAMAP:MF_00351	PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335
PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	EnsemblPlantsGene:Solyc03g025270.2	EnsemblPlants:Solyc03g025270.2.1
UniParc:UPI0002768AC3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:2704706..2707754

Molecular Weight (calculated)

32982.7 Da

IEP (calculated)

10.745

GRAVY (calculated)

-0.335

Length

314 amino acids

Sequence
(BLAST)

001: MVAPTRGRGG GGFRGGRGDG GGRGGRGGRG GFSGGRGGFG SGGSGMKRGG GRGGRGDRGG RGGGRGRGGM KGGSKVVVEP HRHGGVFIAK GKEDALCTKN
101: LVPGEAVYNE KRISVQNEDG TKVEYRVWNP FRSKLAAAIL GGVDDIWIKP GARVLYLGAA SGTTVSHVSD LVGPEGVVYA VEFSHRSGRD LVNMAKKRTN
201: VIPIIEDARH PAKYRMLVGM VDVIFSDVAQ PDQARILALN ASYFLKAGGH FVISIKANCI DSTVPAEAVF AQEVKKLQAE QFKPVEQVTL EPFERDHACV
301: VGAYRVPKKQ KAAA

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.