Factsheet for TraesCS7A01G479900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G196000.2
TraesCS5B01G187400.1
TraesCS5D01G195000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	TraesCS5A01G196000.2	AT2G19670.1	17666011
AT4G25630.1	TraesCS5B01G187400.1	AT2G19670.1	17666011
AT4G25630.1	TraesCS5D01G195000.1	AT2G19670.1	17666011
AT4G25630.1	TraesCS5A01G196000.2	AT4G29510.1	17666011
AT4G25630.1	TraesCS5B01G187400.1	AT4G29510.1	17666011
AT4G25630.1	TraesCS5D01G195000.1	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G400300.1	Wheat	nucleus	86.48	96.35
Os02t0821800-02	Rice	nucleus	94.26	93.88
GSMUA_Achr7P04500_001	Banana	cytosol	90.57	89.47
TraesCS7B01G382200.1	Wheat	nucleus	100.0	85.02
GSMUA_AchrUn_...	Banana	cytosol	33.61	84.54
TraesCS7D01G467000.1	Wheat	nucleus	100.0	84.43
Os05t0176000-01	Rice	nucleus	94.67	74.76
HORVU7Hr1G108780.2	Barley	nucleus	97.95	73.99
EES06036	Sorghum	nucleus	92.62	73.62
AT5G52470.1	Thale cress	nucleus	87.7	69.48
KRH63857	Soybean	nucleus	86.89	69.28
KRH54109	Soybean	endoplasmic reticulum	86.48	69.18
Solyc03g025270.2.1	Tomato	nucleus	88.52	68.79
PGSC0003DMT400026234	Potato	nucleus	87.7	68.15
VIT_16s0050g00880.t01	Wine grape	nucleus	88.11	68.04
KRG97622	Soybean	nucleus	86.89	67.73
KRH31252	Soybean	nucleus	87.3	67.62
Bra019148.1-P	Field mustard	cytosol	84.84	67.43
PGSC0003DMT400010997	Potato	cytosol	41.39	67.33
AT4G25630.1	Thale cress	nucleus, plastid	88.11	67.19
Bra013905.1-P	Field mustard	nucleus	83.2	65.48
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	77.05	64.6
Bra010455.1-P	Field mustard	cytosol	75.0	62.89
TraesCS6A01G195300.1	Wheat	extracellular	29.1	59.66
PGSC0003DMT400053912	Potato	cytosol	63.52	58.71
PGSC0003DMT400077477	Potato	extracellular, golgi	43.03	58.33
AT5G52490.1	Thale cress	cytosol	63.11	52.74
Bra028311.1-P	Field mustard	cytosol	38.52	49.74
CDY27815	Canola	cytosol, nucleus, plastid	8.61	41.18
Zm00001d051885_P001	Maize	plasma membrane, plastid	86.07	33.76

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	InterPro:Fibrillarin	InterPro:Fibrillarin_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	HAMAP:MF_00351
PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335	PANTHER:PTHR10335:SF6
InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	EnsemblPlantsGene:TraesCS7A01G479900	EnsemblPlants:TraesCS7A01G479900.1	:

Description

No Description!

Coordinates

chr7A:-:672042270..672045903

Molecular Weight (calculated)

26579.2 Da

IEP (calculated)

9.504

GRAVY (calculated)

-0.102

Length

244 amino acids

Sequence
(BLAST)

001: MKGGSKVVVV PHKHDGVFIA KAKEDALCTK NMVAGESVYG EKRVSVQNED GTKVEYRVWN PFRSKLAAAV LGGVDNIWIA PGARVLYLGA ASGTTVSHVS
101: DIVGPTGLVY AVEFSHRSGR DLVNMAKKRT NVIPIIEDAR HPAKYRMLVG MVDVIFSDVA QPDQARILAL NASYFLKNGG HFVISIKANC IDSTQAPEAV
201: FAAEVEKLKL EQFKPSEQVT LEPFERDHAC VVGGYRMPKK PKAT

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.