Factsheet for PGSC0003DMT400077477

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
extracellular 4
nucleus 1
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000915
PGSC0003DMT400021726

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	PGSC0003DMT400000915	AT2G19670.1	17666011
AT4G25630.1	PGSC0003DMT400021726	AT2G19670.1	17666011
AT4G25630.1	PGSC0003DMT400000915	AT4G29510.1	17666011
AT4G25630.1	PGSC0003DMT400021726	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010997	Potato	cytosol	67.22	80.67
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	13.33	60.0
Zm00001d014473_P001	Maize	cytosol	33.89	54.46
Zm00001d051631_P001	Maize	cytosol	33.33	53.1
TraesCS6D01G118100.1	Wheat	extracellular	32.78	49.58
KXG20767	Sorghum	nucleus	56.11	49.03
TraesCS6A01G400300.1	Wheat	nucleus	57.22	47.03
TraesCS6A01G195300.1	Wheat	extracellular	30.0	45.38
GSMUA_Achr7P04500_001	Banana	cytosol	60.0	43.72
Os02t0821800-02	Rice	nucleus	59.44	43.67
CDX94434	Canola	cytosol	62.78	43.63
TraesCS7A01G479900.1	Wheat	cytosol	58.33	43.03
CDY27819	Canola	cytosol	46.67	41.79
PGSC0003DMT400053912	Potato	cytosol	57.78	39.39
Bra010455.1-P	Field mustard	cytosol	62.78	38.83
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	57.22	38.43
PGSC0003DMT400026234	Potato	nucleus	66.67	38.22
TraesCS7B01G382200.1	Wheat	nucleus	59.44	37.28
KRH63857	Soybean	nucleus	63.33	37.25
KRH54109	Soybean	endoplasmic reticulum	62.78	37.05
AT5G52470.1	Thale cress	nucleus	63.33	37.01
Bra019148.1-P	Field mustard	cytosol	62.78	36.81
CDX89407	Canola	nucleus	63.33	36.77
Bra013905.1-P	Field mustard	nucleus	63.33	36.77
TraesCS7D01G467000.1	Wheat	nucleus	58.89	36.68
KRH31252	Soybean	nucleus	63.89	36.51
CDY50191	Canola	mitochondrion	63.33	36.42
CDX92724	Canola	nucleus, plastid	61.67	36.39
KRG97622	Soybean	nucleus	62.78	36.1
VIT_16s0050g00880.t01	Wine grape	nucleus	63.33	36.08
AT4G25630.1	Thale cress	nucleus, plastid	63.89	35.94
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	57.78	35.74
CDY27064	Canola	cytosol	57.78	35.74
CDX94433	Canola	nucleus	62.22	35.44
CDY52366	Canola	nucleus	62.78	35.09
Os05t0176000-01	Rice	nucleus	60.0	34.95
Zm00001d050515_P001	Maize	cytosol	31.67	34.55
EES06036	Sorghum	nucleus	58.89	34.53
TraesCS6D01G384500.1	Wheat	nucleus	58.33	33.98
HORVU6Hr1G091860.1	Barley	plasma membrane	57.78	33.88
TraesCS6B01G440500.1	Wheat	nucleus	57.78	33.77
HORVU7Hr1G108780.2	Barley	nucleus	58.89	32.82
CDY00531	Canola	cytosol, nucleus, plastid	32.22	30.85
AT5G52490.1	Thale cress	cytosol	50.0	30.82
Bra028311.1-P	Field mustard	cytosol	32.22	30.69
Zm00001d013457_P001	Maize	cytosol	6.67	30.0
TraesCS4B01G122500.1	Wheat	cytosol	19.44	26.92
Zm00001d053525_P001	Maize	cytosol	17.78	26.89
Zm00001d051885_P001	Maize	plasma membrane, plastid	58.33	16.88
TraesCS2B01G578600.1	Wheat	plastid	28.89	15.71
Zm00001d036744_P001	Maize	nucleus, plastid	18.33	14.16
Zm00001d037391_P001	Maize	cytosol	17.22	12.55
Zm00001d049508_P002	Maize	plastid	8.89	8.79
Zm00001d023745_P001	Maize	nucleus	6.67	8.0
Zm00001d044114_P001	Maize	nucleus	6.67	8.0
Zm00001d001875_P001	Maize	nucleus	6.67	8.0
Zm00001d049509_P001	Maize	plastid	5.56	6.71
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.200.20	Gene3D:3.40.50.150	MapMan:35.1	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006364
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0032259	UniProt:M1CYH1	PFAM:PF01269	EnsemblPlantsGene:PGSC0003DMG400030132
PGSC:PGSC0003DMG400030132	EnsemblPlants:PGSC0003DMT400077477	PRINTS:PR00052	PANTHER:PTHR10335	PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases
SMART:SM01206	SUPFAM:SSF53335	TMHMM:TMhelix	UniParc:UPI000294A015	:	:

Description

Fibrillarin homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400030132]

Coordinates

chr12:+:44629403..44630589

Molecular Weight (calculated)

19702.2 Da

IEP (calculated)

10.053

GRAVY (calculated)

0.118

Length

180 amino acids

Sequence
(BLAST)

001: MCKIKGKQQH NRLSFVLILK PSSCLLVFFC NGGVFIAKGG SKVVVEPHRH GGVFIAKGNK DDLCTKNLVP GEAVYNKKRI YVQNEDGTKV EYRVWNPFLS
101: KSAAAILGGV GDIWILGNHV LYLGAASGTT VSHVSNLVGP EEVVCIVEFS HRSGRDLVNM AKKRTNVIPI IQFRGLFFCG

Best Arabidopsis Sequence Match ( AT5G52470.1 )
(BLAST)

001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS

Arabidopsis Description

MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.