Factsheet for HORVU6Hr1G091860.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G056790.7

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	HORVU5Hr1G056790.7	AT2G19670.1	17666011
AT4G25630.1	HORVU5Hr1G056790.7	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G400300.1	Wheat	nucleus	71.01	99.54
Os02t0821800-02	Rice	nucleus	75.57	94.69
TraesCS6D01G384500.1	Wheat	nucleus	92.18	91.59
TraesCS6B01G440500.1	Wheat	nucleus	90.55	90.26
Os05t0176000-01	Rice	nucleus	86.32	85.76
EES06036	Sorghum	nucleus	84.36	84.36
HORVU7Hr1G108780.2	Barley	nucleus	84.69	80.5
KRH63857	Soybean	nucleus	80.13	80.39
KRH54109	Soybean	endoplasmic reticulum	79.8	80.33
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	10.42	80.0
VIT_16s0050g00880.t01	Wine grape	nucleus	82.08	79.75
Solyc03g025270.2.1	Tomato	nucleus	79.8	78.03
PGSC0003DMT400026234	Potato	nucleus	79.8	78.03
AT5G52470.1	Thale cress	nucleus	77.52	77.27
KRG97622	Soybean	nucleus	78.5	77.0
Bra019148.1-P	Field mustard	cytosol	76.22	76.22
KRH31252	Soybean	nucleus	78.18	76.19
AT4G25630.1	Thale cress	nucleus, plastid	77.85	74.69
Bra010455.1-P	Field mustard	cytosol	70.36	74.23
Bra013905.1-P	Field mustard	nucleus	74.92	74.19
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	67.43	71.13
PGSC0003DMT400053912	Potato	cytosol	57.0	66.29
PGSC0003DMT400010997	Potato	cytosol	31.92	65.33
AT5G52490.1	Thale cress	cytosol	56.68	59.59
PGSC0003DMT400077477	Potato	extracellular, golgi	33.88	57.78
Bra028311.1-P	Field mustard	cytosol	31.6	51.32
Zm00001d051885_P001	Maize	plasma membrane, plastid	79.48	39.23

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	UniProt:A0A287V6Y4	InterPro:Fibrillarin	InterPro:Fibrillarin_CS
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006364	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987
GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:HORVU6Hr1G091860	EnsemblPlants:HORVU6Hr1G091860.1	HAMAP:MF_00351	PFAM:PF01269
PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335	PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases
SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI000B47867B	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr6H:+:576589497..576592940

Molecular Weight (calculated)

32346.8 Da

IEP (calculated)

10.710

GRAVY (calculated)

-0.361

Length

307 amino acids

Sequence
(BLAST)

001: MRAPMRGGGG RGGGRGFGDS GGRGRGRGFG GRSDGGGRSG GRGFGGRSGG RGRGGGRGGG RGGPGMKGGA KVVVVPHKHD GVFIAKAKED ALCTKNMVAG
101: ESVYGEKRVS VQNEDSSKVE YRVWNPFRSK LAAAVLGGVD NIWIAPGTRV LYLGAASGTT VSHVSDIVGP TGLVYAVEFS HRSGRDLVNM AKKRTNVIPI
201: IEDARHPAKY RMLVGMVDVI FSDVAQPDQA RILALNASYF LKNGGHFVIS IKANCIDSTQ AAEAVFASEV EKLKADQFKP SEQVTLEPFE RDHACVVGGY
301: RMPKKQK

Best Arabidopsis Sequence Match ( AT5G52470.1 )
(BLAST)

001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS

Arabidopsis Description

MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.