Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_11s0016g02530.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25630.1 | VIT_11s0016g02530.t01 | AT2G19670.1 | 17666011 |
| AT4G25630.1 | VIT_11s0016g02530.t01 | AT4G29510.1 | 17666011 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P04500_001 | Banana | cytosol | 72.15 | 92.31 |
| Zm00001d013457_P001 | Maize | cytosol | 11.39 | 90.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.53 | 89.69 |
| Os02t0821800-02 | Rice | nucleus | 69.3 | 89.39 |
| TraesCS6A01G400300.1 | Wheat | nucleus | 61.71 | 89.04 |
| TraesCS7A01G479900.1 | Wheat | cytosol | 68.04 | 88.11 |
| Solyc03g025270.2.1 | Tomato | nucleus | 83.23 | 83.76 |
| KRH63857 | Soybean | nucleus | 81.01 | 83.66 |
| TraesCS7B01G382200.1 | Wheat | nucleus | 75.63 | 83.28 |
| TraesCS7D01G467000.1 | Wheat | nucleus | 75.95 | 83.05 |
| KRH54109 | Soybean | endoplasmic reticulum | 80.06 | 82.95 |
| KRH31252 | Soybean | nucleus | 81.96 | 82.22 |
| HORVU6Hr1G091860.1 | Barley | plasma membrane | 79.75 | 82.08 |
| Os05t0176000-01 | Rice | nucleus | 80.06 | 81.88 |
| KRG97622 | Soybean | nucleus | 81.01 | 81.79 |
| TraesCS6D01G384500.1 | Wheat | nucleus | 79.11 | 80.91 |
| AT5G52470.1 | Thale cress | nucleus | 78.8 | 80.84 |
| EES06036 | Sorghum | nucleus | 78.16 | 80.46 |
| CDX92724 | Canola | nucleus, plastid | 77.22 | 80.0 |
| TraesCS6B01G440500.1 | Wheat | nucleus | 77.85 | 79.87 |
| Bra019148.1-P | Field mustard | cytosol | 76.9 | 79.15 |
| AT4G25630.1 | Thale cress | nucleus, plastid | 79.75 | 78.75 |
| CDY50191 | Canola | mitochondrion | 77.85 | 78.59 |
| Bra013905.1-P | Field mustard | nucleus | 76.9 | 78.39 |
| CDX89407 | Canola | nucleus | 76.9 | 78.39 |
| CDX94433 | Canola | nucleus | 77.53 | 77.53 |
| CDY52366 | Canola | nucleus | 78.8 | 77.33 |
| Bra010455.1-P | Field mustard | cytosol | 70.89 | 76.98 |
| KXG20767 | Sorghum | nucleus | 50.0 | 76.7 |
| HORVU7Hr1G108780.2 | Barley | nucleus | 78.16 | 76.47 |
| Bra022595.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 69.3 | 75.26 |
| HORVU5Hr1G060300.1 | Barley | cytosol, golgi, mitochondrion, nucleus | 9.49 | 75.0 |
| CDY27064 | Canola | cytosol | 68.99 | 74.91 |
| CDX91654 | Canola | cytosol, mitochondrion, nucleus, plastid | 62.03 | 73.13 |
| CDX94434 | Canola | cytosol | 59.18 | 72.2 |
| PGSC0003DMT400010997 | Potato | cytosol | 33.54 | 70.67 |
| PGSC0003DMT400053912 | Potato | cytosol | 58.23 | 69.7 |
| Zm00001d014473_P001 | Maize | cytosol | 23.1 | 65.18 |
| Zm00001d051631_P001 | Maize | cytosol | 23.1 | 64.6 |
| CDY27819 | Canola | cytosol | 40.82 | 64.18 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 36.08 | 63.33 |
| AT5G52490.1 | Thale cress | cytosol | 56.65 | 61.3 |
| TraesCS6A01G195300.1 | Wheat | extracellular | 22.47 | 59.66 |
| TraesCS6D01G118100.1 | Wheat | extracellular | 22.47 | 59.66 |
| Bra028311.1-P | Field mustard | cytosol | 31.01 | 51.85 |
| CDY00531 | Canola | cytosol, nucleus, plastid | 30.7 | 51.6 |
| Zm00001d050515_P001 | Maize | cytosol | 24.37 | 46.67 |
| TraesCS4B01G122500.1 | Wheat | cytosol | 16.77 | 40.77 |
| Zm00001d053525_P001 | Maize | cytosol | 14.24 | 37.82 |
| Zm00001d051885_P001 | Maize | plasma membrane, plastid | 72.15 | 36.66 |
| Zm00001d049509_P001 | Maize | plastid | 15.19 | 32.21 |
| Zm00001d049508_P002 | Maize | plastid | 17.72 | 30.77 |
| Zm00001d001875_P001 | Maize | nucleus | 14.56 | 30.67 |
| Zm00001d023745_P001 | Maize | nucleus | 14.56 | 30.67 |
| Zm00001d044114_P001 | Maize | nucleus | 14.56 | 30.67 |
| Zm00001d036744_P001 | Maize | nucleus, plastid | 21.84 | 29.61 |
| Zm00001d037391_P001 | Maize | cytosol | 20.25 | 25.91 |
| TraesCS2B01G578600.1 | Wheat | plastid | 22.78 | 21.75 |
Protein Annotations
| EntrezGene:100266267 | wikigene:100266267 | MapMan:17.1.1.2.1.5.1 | Gene3D:3.30.200.20 | Gene3D:3.40.50.150 | EMBL:AM436404 |
| ProteinID:CAN78338 | ProteinID:CAN78338.1 | ProteinID:CCB47851 | ProteinID:CCB47851.1 | UniProt:F6H6E9 | EMBL:FN595243 |
| InterPro:Fibrillarin | InterPro:Fibrillarin_CS | GO:GO:0000494 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0006464 |
| GO:GO:0006810 | GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008649 |
| GO:GO:0009987 | GO:GO:0015030 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0022857 | GO:GO:0031167 | GO:GO:0031428 | GO:GO:0032040 | GO:GO:0032259 |
| GO:GO:0055085 | GO:GO:1990258 | GO:GO:1990259 | EntrezGene:LOC100266267 | wikigene:LOC100266267 | HAMAP:MF_00351 |
| PFAM:PF01269 | PIRSF:PIRSF006540 | PRINTS:PR00052 | ScanProsite:PS00566 | PANTHER:PTHR10335 | PANTHER:PTHR10335:SF6 |
| InterPro:SAM-dependent_MTases | SMART:SM01206 | SUPFAM:SSF53335 | TIGR:TC60681 | UniParc:UPI0002107EAD | ArrayExpress:VIT_16s0050g00880 |
| EnsemblPlantsGene:VIT_16s0050g00880 | EnsemblPlants:VIT_16s0050g00880.t01 | RefSeq:XP_002271480 | RefSeq:XP_002271480.1 | RefSeq:XP_003634097 | RefSeq:XP_003634097.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr16:+:17812002..17816883
Molecular Weight (calculated)
33400.2 Da
IEP (calculated)
10.874
GRAVY (calculated)
-0.420
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPPAGRGRG GGGFGGGGFR GRGDGGRGRG RGGFGGRGGS DMNSRGGGRG DRGGRGGRGG GRGRGGRGGG GMKGGSRVVV EPHRHEGVFI AKGKEDALVT
101: KNMVPGEAVY NEKRISVQNE DGSKIEYRVW NPFRSKLAAA ILGGVDEIWI KPGARVLYLG AASGTTVSHV SDVVGPTGVV YAVEFSHRSG RDLVNMAKKR
201: TNVIPIIEDA RHPAKYRMLV GMVDVIFSDV AQPDQARILA LNASYFLKAG GHFVISIKAN CIDSTVPAEA VFAQEVKKLQ ADMFKPSEQV TLEPFERDHA
301: CVVGGYRMPK KQKPTA
101: KNMVPGEAVY NEKRISVQNE DGSKIEYRVW NPFRSKLAAA ILGGVDEIWI KPGARVLYLG AASGTTVSHV SDVVGPTGVV YAVEFSHRSG RDLVNMAKKR
201: TNVIPIIEDA RHPAKYRMLV GMVDVIFSDV AQPDQARILA LNASYFLKAG GHFVISIKAN CIDSTVPAEA VFAQEVKKLQ ADMFKPSEQV TLEPFERDHA
301: CVVGGYRMPK KQKPTA
001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA
Arabidopsis Description
MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.