CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013905.1-P	Field mustard	nucleus	100.0	100.0
CDX94433	Canola	nucleus	94.52	92.72
CDY50191	Canola	mitochondrion	90.65	89.78
CDX92724	Canola	nucleus, plastid	87.1	88.52
CDY52366	Canola	nucleus	89.68	86.34
CDX94434	Canola	cytosol	70.97	84.94
AT5G52470.1	Thale cress	nucleus	83.55	84.09
Solyc03g025270.2.1	Tomato	nucleus	79.35	78.34
VIT_16s0050g00880.t01	Wine grape	nucleus	78.39	76.9
CDY27064	Canola	cytosol	69.35	73.88
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	62.9	72.76
PGSC0003DMT400010997	Potato	cytosol	33.55	69.33
PGSC0003DMT400053912	Potato	cytosol	57.74	67.8
CDY27819	Canola	cytosol	43.23	66.67
PGSC0003DMT400077477	Potato	extracellular, golgi	36.77	63.33
CDY27815	Canola	cytosol, nucleus, plastid	9.68	58.82
CDY00531	Canola	cytosol, nucleus, plastid	31.94	52.66

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	GO:A0A078DKI7	EnsemblPlants:CDX89407	ProteinID:CDX89407
ProteinID:CDX89407.1	ncoils:Coil	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00149647001	HAMAP:MF_00351	PFAM:PF01269
PIRSF:PIRSF006540	PRINTS:PR00052	PANTHER:PTHR10335	PANTHER:PTHR10335:SF6	InterPro:SAM-dependent_MTases	SMART:SM01206
SUPFAM:SSF53335	UniParc:UPI0002546A08	SEG:seg	:	:	:

Description

BnaA01g14860D

Coordinates

chrLK031858:-:1446935..1449330

Molecular Weight (calculated)

32961.6 Da

IEP (calculated)

10.746

GRAVY (calculated)

-0.418

Length

310 amino acids

Sequence
(BLAST)

001: MRPPLTGGRG GGGFSGGRGG GGFSGGRSGG RGRGFGDRGG GRSGRGMRGR GERGRNGRGA PGRGGMKGGS KVIVEPHRHP GVFIAKGKED ALVTKNLVPG
101: EAVYNEKRIS VQNEDGTKTE YRVWNPFRSK LAAAILGGVD NIYIKPGSKV LYLGAASGTT VSHVSDIVGP EGCVYAVEFS HRSGRDLVNM AKKRTNIIPI
201: IEDARHPAKY RMLVGMVDVV FADVAQPDQA RIVALNSSFF LKTGGHFNIS IKANCIDSTV PAEAVFQSEV KKLQQEQFKP AEQVTLEPFE RDHACVVGTY
301: RAPKKTKVAA

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.