CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89407	Canola	nucleus	84.94	70.97
PGSC0003DMT400010997	Potato	cytosol	40.15	69.33
CDX94433	Canola	nucleus	82.63	67.72
CDY50191	Canola	mitochondrion	79.15	65.5
CDX92724	Canola	nucleus, plastid	74.9	63.61
CDY52366	Canola	nucleus	78.38	63.04
AT5G52470.1	Thale cress	nucleus	74.9	62.99
PGSC0003DMT400077477	Potato	extracellular, golgi	43.63	62.78
PGSC0003DMT400053912	Potato	cytosol	62.93	61.74
CDY27819	Canola	cytosol	47.1	60.7
Solyc03g025270.2.1	Tomato	nucleus	73.36	60.51
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	62.16	60.07
VIT_16s0050g00880.t01	Wine grape	nucleus	72.2	59.18
CDY27064	Canola	cytosol	63.32	56.36
CDY00531	Canola	cytosol, nucleus, plastid	30.12	41.49
CDY27815	Canola	cytosol, nucleus, plastid	3.47	17.65

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	GO:A0A078E1A9	EnsemblPlants:CDX94434	ProteinID:CDX94434
ProteinID:CDX94434.1	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00157578001	PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052
PANTHER:PTHR10335	PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI0004EF49EE
SEG:seg	:	:	:	:	:

Description

BnaC01g17500D

Coordinates

chrLK031881:-:1130415..1131691

Molecular Weight (calculated)

27473.0 Da

IEP (calculated)

10.754

GRAVY (calculated)

-0.434

Length

259 amino acids

Sequence
(BLAST)

001: MRPPLTGGRG GGGFSGGRGG GGFSGGRSGG RGRAGGRGFG DRGGGGGRSG RGMRGRGERG RNGRGAPGRG GMKGGSKVIV EPHRHPGVFI AKGKEDALVT
101: KNLVPGEAVY NEKRISVQNE DGTKTEYRVW NPFRSKLAAA ILGGVDNIYI KPGAKVLYLG AASGTTVSHV SDIVGPEGCV YAVEFSHRSG RDLVNMAKKR
201: TNIIPIIEDA RHPAKYRMLV GMVDVVFADV AQPDQVCFLY YILLSVHVFY SRAREEERD

Best Arabidopsis Sequence Match ( AT5G52470.2 )
(BLAST)

001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQNLGP ECLIFPQNWW TLCYLNQGQL YRLYSCSRSS LPERGEEAAT RAV

Arabidopsis Description

MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.