CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	99.31	99.31
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	89.69	97.39
CDX92724	Canola	nucleus, plastid	74.91	71.48
Solyc03g025270.2.1	Tomato	nucleus	75.6	70.06
CDY50191	Canola	mitochondrion	74.91	69.65
KRH63857	Soybean	nucleus	73.2	69.61
CDX89407	Canola	nucleus	73.88	69.35
CDX94433	Canola	nucleus	75.26	69.3
CDY52366	Canola	nucleus	76.63	69.25
KRH54109	Soybean	endoplasmic reticulum	72.51	69.18
CDY27819	Canola	cytosol	47.77	69.15
VIT_16s0050g00880.t01	Wine grape	nucleus	74.91	68.99
KRG97622	Soybean	nucleus	72.51	67.41
KRH31252	Soybean	nucleus	72.85	67.3
PGSC0003DMT400010997	Potato	cytosol	34.02	66.0
CDX94434	Canola	cytosol	56.36	63.32
PGSC0003DMT400053912	Potato	cytosol	54.98	60.61
PGSC0003DMT400077477	Potato	extracellular, golgi	35.74	57.78
AT5G52490.1	Thale cress	cytosol	57.73	57.53
CDY00531	Canola	cytosol, nucleus, plastid	35.74	55.32
CDY27815	Canola	cytosol, nucleus, plastid	6.87	39.22

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	GO:A0A078GPE0	UniProt:A0A078GPE0	EnsemblPlants:CDY27064
ProteinID:CDY27064	ProteinID:CDY27064.1	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00036881001
HAMAP:MF_00351	PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	PANTHER:PTHR10335	PANTHER:PTHR10335:SF4
InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI0004EE5357	SEG:seg	:

Description

BnaA02g10840DBnaA02g10840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPE0]

Coordinates

chrLK032199:-:278625..280800

Molecular Weight (calculated)

31341.0 Da

IEP (calculated)

10.352

GRAVY (calculated)

-0.360

Length

291 amino acids

Sequence
(BLAST)

001: MRSPLRGRGR GEGSAMRGGG RGPRGRGPGG RVPGGRGPRS GPGGMKGGNK VIVTPHRHEG VFIGKGKDEV ILTKNLVPGE SVYNEKRISV QNEDGTKVEY
101: RVWNPFCSKL AAAIFGGLDD IWIKPGAKVL YLGAASGTSV SHVSDIVGPE GCVYAVEFSP RSGRDLVNMA KKRRNVVPII EDARHPAKYR MLVSMVDVIF
201: ADVAQPDQAR IVGLNASFFL KAGGHYMISI KAKCIDATMP AETVFSNEVK KLQADELKPA EQITLEPYER DHACVVGGYR MPKKQKTATA S

Best Arabidopsis Sequence Match ( AT5G52490.1 )
(BLAST)

001: MKPPQRGRGG GVRGGRGLAR GGEGSAVRGS GRGGESGRGR GPGRVKSESD GGIKGGSKVL VTPHRHAGVF VAKSKADALV TKNLVPGEII YNEKRIFVQN
101: EDRSTVEYRV WNPHRSKLAD AITTGVDNIW IKPGVKVLYL GASSGYTVSH VSDIVGPEGC VYAVEHSDIC GKVLMNMAEK RTNVIPIIED ARHPAKYRML
201: VGMVDIIFSD VNHPEQANIL SLNASYFLKS GGHFMISIKA NSIDSTIAAE TVYQMEVEKL QMEELRPTEI LHLDSCEEKH ACVFGGYRLP RK

Arabidopsis Description

FIB3Putative rRNA 2'-O-methyltransferase fibrillarin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.