Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27064 | Canola | cytosol | 99.31 | 99.31 |
| CDX91654 | Canola | cytosol, mitochondrion, nucleus, plastid | 89.0 | 96.64 |
| Zm00001d013457_P001 | Maize | cytosol | 11.0 | 80.0 |
| GSMUA_Achr7P04500_001 | Banana | cytosol | 67.35 | 79.35 |
| Os02t0821800-02 | Rice | nucleus | 66.67 | 79.18 |
| TraesCS6A01G400300.1 | Wheat | nucleus | 59.45 | 79.0 |
| TraesCS7A01G479900.1 | Wheat | cytosol | 64.6 | 77.05 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.09 | 75.26 |
| KXG20767 | Sorghum | nucleus | 51.2 | 72.33 |
| Bra019148.1-P | Field mustard | cytosol | 76.29 | 72.31 |
| TraesCS7B01G382200.1 | Wheat | nucleus | 70.79 | 71.78 |
| KRH63857 | Soybean | nucleus | 73.88 | 70.26 |
| Solyc03g025270.2.1 | Tomato | nucleus | 75.6 | 70.06 |
| Bra013905.1-P | Field mustard | nucleus | 74.57 | 70.0 |
| TraesCS7D01G467000.1 | Wheat | nucleus | 69.42 | 69.9 |
| KRH54109 | Soybean | endoplasmic reticulum | 73.2 | 69.84 |
| Bra010455.1-P | Field mustard | cytosol | 69.42 | 69.42 |
| EES06036 | Sorghum | nucleus | 73.2 | 69.38 |
| VIT_16s0050g00880.t01 | Wine grape | nucleus | 75.26 | 69.3 |
| Os05t0176000-01 | Rice | nucleus | 72.51 | 68.28 |
| TraesCS6D01G384500.1 | Wheat | nucleus | 72.16 | 67.96 |
| KRH31252 | Soybean | nucleus | 73.2 | 67.62 |
| TraesCS6B01G440500.1 | Wheat | nucleus | 71.48 | 67.53 |
| HORVU6Hr1G091860.1 | Barley | plasma membrane | 71.13 | 67.43 |
| KRG97622 | Soybean | nucleus | 72.51 | 67.41 |
| PGSC0003DMT400010997 | Potato | cytosol | 34.36 | 66.67 |
| HORVU5Hr1G060300.1 | Barley | cytosol, golgi, mitochondrion, nucleus | 8.93 | 65.0 |
| HORVU7Hr1G108780.2 | Barley | nucleus | 70.45 | 63.47 |
| PGSC0003DMT400053912 | Potato | cytosol | 55.33 | 60.98 |
| Zm00001d014473_P001 | Maize | cytosol | 22.34 | 58.04 |
| AT5G52490.1 | Thale cress | cytosol | 58.08 | 57.88 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 35.74 | 57.78 |
| Zm00001d051631_P001 | Maize | cytosol | 22.34 | 57.52 |
| Bra028311.1-P | Field mustard | cytosol | 36.43 | 56.08 |
| TraesCS6D01G118100.1 | Wheat | extracellular | 22.34 | 54.62 |
| TraesCS6A01G195300.1 | Wheat | extracellular | 21.99 | 53.78 |
| Zm00001d050515_P001 | Maize | cytosol | 23.02 | 40.61 |
| TraesCS4B01G122500.1 | Wheat | cytosol | 16.49 | 36.92 |
| Zm00001d051885_P001 | Maize | plasma membrane, plastid | 65.98 | 30.87 |
| Zm00001d053525_P001 | Maize | cytosol | 12.03 | 29.41 |
| Zm00001d036744_P001 | Maize | nucleus, plastid | 23.37 | 29.18 |
| Zm00001d044114_P001 | Maize | nucleus | 14.78 | 28.67 |
| Zm00001d023745_P001 | Maize | nucleus | 14.78 | 28.67 |
| Zm00001d001875_P001 | Maize | nucleus | 14.78 | 28.67 |
| Zm00001d037391_P001 | Maize | cytosol | 23.37 | 27.53 |
| Zm00001d049509_P001 | Maize | plastid | 13.75 | 26.85 |
| Zm00001d049508_P002 | Maize | plastid | 16.49 | 26.37 |
| TraesCS2B01G578600.1 | Wheat | plastid | 22.68 | 19.94 |
Protein Annotations
| MapMan:17.1.1.2.1.5.1 | Gene3D:3.30.200.20 | Gene3D:3.40.50.150 | EnsemblPlantsGene:Bra022595 | EnsemblPlants:Bra022595.1 | EnsemblPlants:Bra022595.1-P |
| InterPro:Fibrillarin | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0032259 | UniProt:M4E1E7 | HAMAP:MF_00351 | PFAM:PF01269 |
| PIRSF:PIRSF006540 | PRINTS:PR00052 | PANTHER:PTHR10335 | PANTHER:PTHR10335:SF4 | InterPro:SAM-dependent_MTases | SMART:SM01206 |
| SUPFAM:SSF53335 | UniParc:UPI0002546FC9 | SEG:seg | : | : | : |
Description
AT4G25630 (E=4e-118) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding
Coordinates
chrA02:-:8651548..8653498
Molecular Weight (calculated)
31493.2 Da
IEP (calculated)
10.546
GRAVY (calculated)
-0.398
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSPLRGRGR GEGSAMRGGG RGPRGRGPRG RVPGGRGPRS GPGGMKGGNK VIVTPHRHEG VFIGKGKDEV ILTKNLVPGE SVYNEKRISV QNEDGTKVEY
101: RVWNPFRSKL AAAIFGGLDD IWIKPGAKVL YLGAASGTSV SHVSDIVGPE GCVYAVEFSP RSGRDLVNMA KKRRNVVPII EDARHPAKYR MLVSMVDVIF
201: ADVAQPDQAR IVGLNASFFL KAGGHYMISI KAKCIDATMP AETVFSNEVK KLQADELKPA EQITLEPYER DHACVVGGYR MPKKQKTATA S
101: RVWNPFRSKL AAAIFGGLDD IWIKPGAKVL YLGAASGTSV SHVSDIVGPE GCVYAVEFSP RSGRDLVNMA KKRRNVVPII EDARHPAKYR MLVSMVDVIF
201: ADVAQPDQAR IVGLNASFFL KAGGHYMISI KAKCIDATMP AETVFSNEVK KLQADELKPA EQITLEPYER DHACVVGGYR MPKKQKTATA S
001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA
Arabidopsis Description
MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.