Factsheet for GSMUA_Achr7P04500_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P22570_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	GSMUA_Achr6P22570_001	AT2G19670.1	17666011
AT4G25630.1	GSMUA_Achr6P22570_001	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	37.65	95.88
TraesCS6A01G400300.1	Wheat	nucleus	82.19	92.69
Os02t0821800-02	Rice	nucleus	91.5	92.24
TraesCS7A01G479900.1	Wheat	cytosol	89.47	90.57
KXG20767	Sorghum	nucleus	64.37	77.18
TraesCS7B01G382200.1	Wheat	nucleus	89.47	77.0
TraesCS7D01G467000.1	Wheat	nucleus	89.47	76.47
Os05t0176000-01	Rice	nucleus	91.9	73.46
TraesCS6D01G384500.1	Wheat	nucleus	91.5	73.14
TraesCS6B01G440500.1	Wheat	nucleus	90.69	72.73
KRH63857	Soybean	nucleus	89.88	72.55
KRH54109	Soybean	endoplasmic reticulum	89.47	72.46
VIT_16s0050g00880.t01	Wine grape	nucleus	92.31	72.15
EES06036	Sorghum	nucleus	89.47	71.99
PGSC0003DMT400026234	Potato	nucleus	91.5	71.97
Solyc03g025270.2.1	Tomato	nucleus	90.69	71.34
KRG97622	Soybean	nucleus	89.88	70.93
AT5G52470.1	Thale cress	nucleus	87.85	70.45
KRH31252	Soybean	nucleus	89.47	70.16
PGSC0003DMT400010997	Potato	cytosol	42.11	69.33
Bra019148.1-P	Field mustard	cytosol	85.43	68.73
AT4G25630.1	Thale cress	nucleus, plastid	88.66	68.44
Bra013905.1-P	Field mustard	nucleus	85.02	67.74
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	79.35	67.35
Bra010455.1-P	Field mustard	cytosol	75.71	64.26
TraesCS6D01G118100.1	Wheat	extracellular	30.36	63.03
TraesCS6A01G195300.1	Wheat	extracellular	29.55	61.34
PGSC0003DMT400077477	Potato	extracellular, golgi	43.72	60.0
PGSC0003DMT400053912	Potato	cytosol	62.75	58.71
AT5G52490.1	Thale cress	cytosol	63.16	53.42
CDY27815	Canola	cytosol, nucleus, plastid	10.53	50.98
Bra028311.1-P	Field mustard	cytosol	38.46	50.26
TraesCS4B01G122500.1	Wheat	cytosol	19.03	36.15
Zm00001d049509_P001	Maize	plastid	20.24	33.56
Zm00001d049508_P002	Maize	plastid	22.27	30.22
TraesCS2B01G578600.1	Wheat	plastid	28.34	21.15

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	InterPro:Fibrillarin	InterPro:Fibrillarin_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740
GO:GO:0032259	EnsemblPlantsGene:GSMUA_Achr7G04500_001	EnsemblPlants:GSMUA_Achr7P04500_001	EnsemblPlants:GSMUA_Achr7T04500_001	UniProt:M0TEP0	HAMAP:MF_00351
PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335	PANTHER:PTHR10335:SF6
InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI000295A51B	:	:

Description

rRNA 2'-O-methyltransferase fibrillarin 2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G04500_001]

Coordinates

chr7:-:3404272..3407967

Molecular Weight (calculated)

27007.5 Da

IEP (calculated)

9.530

GRAVY (calculated)

-0.166

Length

247 amino acids

Sequence
(BLAST)

001: MKGGSRVVVQ PHRHDGVFVA KGKEDALCTK NMVPGEAVYG EKRVSVQNED GSKVEYRVWN PFRSKLAAAI LGGVDNIWIA PGTRVLYLGA ASGTTVSHVS
101: DIVGPTGVVY AVEFSHRSGR DLVNMAKKRT NVIPIIEDAR HPARYRMLVG MVDVIFSDVA QPDQARILAL NASYFLKNGG HFVISIKANC IDSTVPAEAV
201: FAQEVKKLQA DQFKPSEQVT LEPFERDHAC VVGGYRMPKK QKVATES

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.