Factsheet for TraesCS6B01G440500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G196000.2
TraesCS5B01G187400.1
TraesCS5D01G195000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	TraesCS5A01G196000.2	AT2G19670.1	17666011
AT4G25630.1	TraesCS5B01G187400.1	AT2G19670.1	17666011
AT4G25630.1	TraesCS5D01G195000.1	AT2G19670.1	17666011
AT4G25630.1	TraesCS5A01G196000.2	AT4G29510.1	17666011
AT4G25630.1	TraesCS5B01G187400.1	AT4G29510.1	17666011
AT4G25630.1	TraesCS5D01G195000.1	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G400300.1	Wheat	nucleus	70.45	99.09
TraesCS6D01G384500.1	Wheat	nucleus	97.08	96.76
Os02t0821800-02	Rice	nucleus	75.0	94.29
GSMUA_Achr7P04500_001	Banana	cytosol	72.73	90.69
HORVU6Hr1G091860.1	Barley	plasma membrane	90.26	90.55
TraesCS7B01G382200.1	Wheat	nucleus	83.44	89.55
GSMUA_AchrUn_...	Banana	cytosol	27.27	86.6
Os05t0176000-01	Rice	nucleus	85.06	84.79
EES06036	Sorghum	nucleus	83.77	84.04
KRH54109	Soybean	endoplasmic reticulum	78.25	79.02
KRH63857	Soybean	nucleus	78.25	78.76
PGSC0003DMT400026234	Potato	nucleus	79.87	78.34
VIT_16s0050g00880.t01	Wine grape	nucleus	79.87	77.85
Solyc03g025270.2.1	Tomato	nucleus	79.22	77.71
KRH31252	Soybean	nucleus	77.92	76.19
KRG97622	Soybean	nucleus	77.27	76.04
AT5G52470.1	Thale cress	nucleus	75.65	75.65
Bra019148.1-P	Field mustard	cytosol	73.38	73.62
AT4G25630.1	Thale cress	nucleus, plastid	75.65	72.81
Bra013905.1-P	Field mustard	nucleus	72.4	71.94
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	67.53	71.48
Bra010455.1-P	Field mustard	cytosol	67.53	71.48
PGSC0003DMT400053912	Potato	cytosol	57.14	66.67
PGSC0003DMT400010997	Potato	cytosol	31.82	65.33
AT5G52490.1	Thale cress	cytosol	56.17	59.25
PGSC0003DMT400077477	Potato	extracellular, golgi	33.77	57.78
Bra028311.1-P	Field mustard	cytosol	31.17	50.79
TraesCS4B01G122500.1	Wheat	cytosol	20.45	48.46
CDY27815	Canola	cytosol, nucleus, plastid	7.14	43.14
Zm00001d051885_P001	Maize	plasma membrane, plastid	78.57	38.91
TraesCS2B01G578600.1	Wheat	plastid	24.68	22.96

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	InterPro:Fibrillarin	InterPro:Fibrillarin_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	HAMAP:MF_00351
PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335	PANTHER:PTHR10335:SF6
InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	EnsemblPlantsGene:TraesCS6B01G440500	EnsemblPlants:TraesCS6B01G440500.1	SEG:seg

Description

No Description!

Coordinates

chr6B:+:705497185..705500263

Molecular Weight (calculated)

32414.9 Da

IEP (calculated)

10.710

GRAVY (calculated)

-0.354

Length

308 amino acids

Sequence
(BLAST)

001: MRAPMRGGGG RGGGRGFGDS GGRGGRGRGF GGRSDGGGRS GGRGFGGRSA GRGRGGGRGG GRGGPGMKGG AKVVVVPHKH DGVFIAKAKE DALCTKNMVA
101: GESVYGEKRV SVQNEDASKV EYRVWNPFRS KLAAAVLGGV DNIWIAPGTR VLYLGAASGT TVSHVSDIVG PNGLVYAVEF SHRSGRDLVN MAKKRTNVIP
201: IIEDARHPAK YRMLVGMVDV IFSDVAQPDQ ARILALNASY FLKNGGHFVI SIKANCIDST QAAEAVFASE VEKLKADQFK PSEQVTLEPF ERDHACVVGG
301: YRMPKKQK

Best Arabidopsis Sequence Match ( AT5G52470.1 )
(BLAST)

001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS

Arabidopsis Description

MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.