Factsheet for Bra010455.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52366	Canola	nucleus	99.31	89.75
Zm00001d013457_P001	Maize	cytosol	12.03	87.5
Bra019148.1-P	Field mustard	cytosol	86.6	82.08
Bra013905.1-P	Field mustard	nucleus	86.94	81.61
AT5G52470.1	Thale cress	nucleus	82.82	78.25
KXG20767	Sorghum	nucleus	54.3	76.7
GSMUA_Achr7P04500_001	Banana	cytosol	64.26	75.71
Os02t0821800-02	Rice	nucleus	63.57	75.51
TraesCS7A01G479900.1	Wheat	cytosol	62.89	75.0
Solyc03g025270.2.1	Tomato	nucleus	80.07	74.2
TraesCS6A01G400300.1	Wheat	nucleus	55.33	73.52
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	9.97	72.5
TraesCS7B01G382200.1	Wheat	nucleus	71.13	72.13
EES06036	Sorghum	nucleus	74.91	71.01
TraesCS7D01G467000.1	Wheat	nucleus	70.45	70.93
VIT_16s0050g00880.t01	Wine grape	nucleus	76.98	70.89
PGSC0003DMT400053912	Potato	cytosol	64.26	70.83
HORVU6Hr1G091860.1	Barley	plasma membrane	74.23	70.36
Os05t0176000-01	Rice	nucleus	74.57	70.23
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	69.42	69.42
PGSC0003DMT400010997	Potato	cytosol	35.74	69.33
TraesCS6D01G384500.1	Wheat	nucleus	73.2	68.93
TraesCS6B01G440500.1	Wheat	nucleus	71.48	67.53
HORVU7Hr1G108780.2	Barley	nucleus	72.51	65.33
PGSC0003DMT400077477	Potato	extracellular, golgi	38.83	62.78
Zm00001d014473_P001	Maize	cytosol	24.05	62.5
Zm00001d051631_P001	Maize	cytosol	24.05	61.95
GSMUA_AchrUn_...	Banana	cytosol	19.93	59.79
TraesCS6D01G118100.1	Wheat	extracellular	23.02	56.3
TraesCS6A01G195300.1	Wheat	extracellular	22.34	54.62
Bra028311.1-P	Field mustard	cytosol	32.99	50.79
Zm00001d050515_P001	Maize	cytosol	24.74	43.64
TraesCS4B01G122500.1	Wheat	cytosol	17.18	38.46
Zm00001d051885_P001	Maize	plasma membrane, plastid	74.91	35.05
Zm00001d053525_P001	Maize	cytosol	13.06	31.93
Zm00001d036744_P001	Maize	nucleus, plastid	23.02	28.76
Zm00001d001875_P001	Maize	nucleus	14.78	28.67
Zm00001d023745_P001	Maize	nucleus	14.78	28.67
Zm00001d044114_P001	Maize	nucleus	14.78	28.67
Zm00001d049508_P002	Maize	plastid	17.53	28.02
Zm00001d049509_P001	Maize	plastid	14.09	27.52
Zm00001d037391_P001	Maize	cytosol	21.31	25.1
TraesCS2B01G578600.1	Wheat	plastid	25.43	22.36

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	EnsemblPlantsGene:Bra010455	EnsemblPlants:Bra010455.1	EnsemblPlants:Bra010455.1-P
InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006364	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	UniProt:M4D1V5	PFAM:PF01269	PIRSF:PIRSF006540
PRINTS:PR00052	PANTHER:PTHR10335	PANTHER:PTHR10335:SF6	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335
UniParc:UPI0002545A35	SEG:seg	:	:	:	:

Description

AT4G25630 (E=1e-114) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding

Coordinates

chrA08:-:14604916..14606665

Molecular Weight (calculated)

30361.4 Da

IEP (calculated)

10.887

GRAVY (calculated)

-0.386

Length

291 amino acids

Sequence
(BLAST)

001: MRPPLTGGRG GGGFSGGRGG GGYSGGRGGS SGGRGRGGGR GFGDRGGRGG GRGMSRGGRG DRGRGRGGPG GRGGMKGGSK VIVEPHRHAG VFIAKGKEDA
101: LVTRNLVPGE AVYNEKRISV PNEDGTKTEY RVWNPFRSKL AAAILGGVDN IYIKPGAKVL YLGAASGTTV SHVSDLVGPE GCVYAVEFSH RSGRDLVNMA
201: KKRTNVIPII EDARHPAKYR MLVGMVDVIF ADVAQPDQAR IVALNASFFL KTGGHFVISI KANCIDSTVP AEAVFQSEVK KLQQEQFKPA E

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.