CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010455.1-P	Field mustard	cytosol	89.75	99.31
CDX92724	Canola	nucleus, plastid	87.89	92.79
CDY50191	Canola	mitochondrion	89.75	92.33
CDX94433	Canola	nucleus	88.51	90.19
CDX89407	Canola	nucleus	86.34	89.68
AT5G52470.1	Thale cress	nucleus	82.61	86.36
Solyc03g025270.2.1	Tomato	nucleus	79.81	81.85
VIT_16s0050g00880.t01	Wine grape	nucleus	77.33	78.8
CDX94434	Canola	cytosol	63.04	78.38
CDY27064	Canola	cytosol	69.25	76.63
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	62.73	75.37
PGSC0003DMT400053912	Potato	cytosol	58.07	70.83
PGSC0003DMT400010997	Potato	cytosol	32.3	69.33
CDY27819	Canola	cytosol	41.93	67.16
PGSC0003DMT400077477	Potato	extracellular, golgi	35.09	62.78
CDY27815	Canola	cytosol, nucleus, plastid	9.01	56.86
CDY00531	Canola	cytosol, nucleus, plastid	31.68	54.26

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	GO:A0A078IR48	UniProt:A0A078IR48	EnsemblPlants:CDY52366
ProteinID:CDY52366	ProteinID:CDY52366.1	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00006801001
HAMAP:MF_00351	PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	PANTHER:PTHR10335	PANTHER:PTHR10335:SF6
InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI0004EDD4A8	SEG:seg	:

Description

BnaA08g31010DBnaA08g31010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IR48]

Coordinates

chrLK033080:+:75472..77572

Molecular Weight (calculated)

33630.3 Da

IEP (calculated)

10.786

GRAVY (calculated)

-0.383

Length

322 amino acids

Sequence
(BLAST)

001: MRPPLTGGRG GGGFSGGRGG GGYSGGRGGS SGGRGRGGGR GFGDRGGRGG GRGMSRGGGR GDRGRGRGGP GGRGGMKGGS KVIVEPHRHA GVFIAKGKED
101: ALVTRNLVPG EAVYNEKRIS VPNEDGTKTE YRVWNPFRSK LAAAILGGVD NIYIKPGAKV LYLGAASGTT VSHVSDLVGP EGCVYAVEFS HRSGRDLVNM
201: AKKRTNVIPI IEDARHPAKY RMLVGMVDVI FADVAQPDQA RIVALNASFF LKTGGHFVIS IKANCIDSTV PAEAVFQSEV KKLQQEQFKP AEQVTLEPFE
301: RDHACVVGTY RAPKKAKAAT AA

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.