Factsheet for PGSC0003DMT400010997

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000915
PGSC0003DMT400021726

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	PGSC0003DMT400000915	AT2G19670.1	17666011
AT4G25630.1	PGSC0003DMT400021726	AT2G19670.1	17666011
AT4G25630.1	PGSC0003DMT400000915	AT4G29510.1	17666011
AT4G25630.1	PGSC0003DMT400021726	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077477	Potato	extracellular, golgi	80.67	67.22
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	14.67	55.0
Zm00001d014473_P001	Maize	cytosol	38.67	51.79
Zm00001d051631_P001	Maize	cytosol	38.0	50.44
TraesCS6D01G118100.1	Wheat	extracellular	38.0	47.9
KXG20767	Sorghum	nucleus	64.0	46.6
TraesCS6A01G400300.1	Wheat	nucleus	66.0	45.21
TraesCS6A01G195300.1	Wheat	extracellular	34.67	43.7
GSMUA_Achr7P04500_001	Banana	cytosol	69.33	42.11
Os02t0821800-02	Rice	nucleus	68.67	42.04
TraesCS7A01G479900.1	Wheat	cytosol	67.33	41.39
CDY27819	Canola	cytosol	54.0	40.3
CDX94434	Canola	cytosol	69.33	40.15
PGSC0003DMT400053912	Potato	cytosol	67.33	38.26
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	66.67	37.31
PGSC0003DMT400026234	Potato	nucleus	75.33	35.99
Bra010455.1-P	Field mustard	cytosol	69.33	35.74
TraesCS7B01G382200.1	Wheat	nucleus	67.33	35.19
AT5G52470.1	Thale cress	nucleus	72.0	35.06
TraesCS7D01G467000.1	Wheat	nucleus	67.33	34.95
KRH63857	Soybean	nucleus	70.67	34.64
CDX92724	Canola	nucleus, plastid	70.0	34.43
KRH54109	Soybean	endoplasmic reticulum	70.0	34.43
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	66.67	34.36
CDY27064	Canola	cytosol	66.0	34.02
KRH31252	Soybean	nucleus	71.33	33.97
Bra019148.1-P	Field mustard	cytosol	69.33	33.88
KRG97622	Soybean	nucleus	70.67	33.87
CDX89407	Canola	nucleus	69.33	33.55
Bra013905.1-P	Field mustard	nucleus	69.33	33.55
VIT_16s0050g00880.t01	Wine grape	nucleus	70.67	33.54
AT4G25630.1	Thale cress	nucleus, plastid	71.33	33.44
CDY50191	Canola	mitochondrion	69.33	33.23
Os05t0176000-01	Rice	nucleus	68.0	33.01
CDX94433	Canola	nucleus	69.33	32.91
EES06036	Sorghum	nucleus	66.67	32.57
CDY52366	Canola	nucleus	69.33	32.3
TraesCS6D01G384500.1	Wheat	nucleus	66.0	32.04
HORVU6Hr1G091860.1	Barley	plasma membrane	65.33	31.92
TraesCS6B01G440500.1	Wheat	nucleus	65.33	31.82
Zm00001d050515_P001	Maize	cytosol	34.0	30.91
HORVU7Hr1G108780.2	Barley	nucleus	66.0	30.65
CDY00531	Canola	cytosol, nucleus, plastid	37.33	29.79
Bra028311.1-P	Field mustard	cytosol	37.33	29.63
AT5G52490.1	Thale cress	cytosol	57.33	29.45
Zm00001d013457_P001	Maize	cytosol	7.33	27.5
TraesCS4B01G122500.1	Wheat	cytosol	21.33	24.62
Zm00001d053525_P001	Maize	cytosol	19.33	24.37
Zm00001d051885_P001	Maize	plasma membrane, plastid	66.0	15.92
TraesCS2B01G578600.1	Wheat	plastid	33.33	15.11
Zm00001d036744_P001	Maize	nucleus, plastid	21.33	13.73
Zm00001d037391_P001	Maize	cytosol	21.33	12.96
Zm00001d049508_P002	Maize	plastid	9.33	7.69
Zm00001d049509_P001	Maize	plastid	7.33	7.38
Zm00001d023745_P001	Maize	nucleus	7.33	7.33
Zm00001d044114_P001	Maize	nucleus	7.33	7.33
Zm00001d001875_P001	Maize	nucleus	7.33	7.33
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.200.20	Gene3D:3.40.50.150	MapMan:35.1	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259
UniProt:M0ZYW7	PFAM:PF01269	EnsemblPlantsGene:PGSC0003DMG400004308	PGSC:PGSC0003DMG400004308	EnsemblPlants:PGSC0003DMT400010997	PRINTS:PR00052
PANTHER:PTHR10335	PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI000296128F

Description

Fibrillarin homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400004308]

Coordinates

chr8:-:22447530..22448617

Molecular Weight (calculated)

16627.4 Da

IEP (calculated)

10.437

GRAVY (calculated)

-0.013

Length

150 amino acids

Sequence
(BLAST)

001: MFIAKSGSKV VVEPHRHGGV FTAKGKKDDL CTKNLVPGEV VYNEKKIFVQ NEDGTKVEYR VWNPFRSKLA AAIFGGADDV WILKKPGNRV LYQGAASGTT
101: IFIVSNLVGP IRVVYVIEFS HRSGRDLVNM AKKPTNVIPI IQFRGLFFCG

Best Arabidopsis Sequence Match ( AT5G52470.1 )
(BLAST)

001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS

Arabidopsis Description

MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.