CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00531	Canola	cytosol, nucleus, plastid	60.7	64.89
PGSC0003DMT400010997	Potato	cytosol	40.3	54.0
CDY27064	Canola	cytosol	69.15	47.77
CDX94434	Canola	cytosol	60.7	47.1
PGSC0003DMT400077477	Potato	extracellular, golgi	41.79	46.67
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	62.19	46.64
CDX92724	Canola	nucleus, plastid	68.16	44.92
CDX89407	Canola	nucleus	66.67	43.23
PGSC0003DMT400053912	Potato	cytosol	56.72	43.18
CDY50191	Canola	mitochondrion	67.16	43.13
CDX94433	Canola	nucleus	67.16	42.72
Solyc03g025270.2.1	Tomato	nucleus	66.17	42.36
KRH54109	Soybean	endoplasmic reticulum	63.68	41.97
CDY52366	Canola	nucleus	67.16	41.93
KRH63857	Soybean	nucleus	63.68	41.83
AT5G52490.1	Thale cress	cytosol	60.7	41.78
KRG97622	Soybean	nucleus	63.68	40.89
VIT_16s0050g00880.t01	Wine grape	nucleus	64.18	40.82
KRH31252	Soybean	nucleus	63.68	40.63
CDY27815	Canola	cytosol, nucleus, plastid	2.49	9.8

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	GO:A0A078GRH7	UniProt:A0A078GRH7	EnsemblPlants:CDY27819
ProteinID:CDY27819	ProteinID:CDY27819.1	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00038631001
PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	PANTHER:PTHR10335	PANTHER:PTHR10335:SF6	InterPro:SAM-dependent_MTases
SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI0004EDCEF6	:	:	:

Description

BnaC09g28460DBnaC09g28460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRH7]

Coordinates

chrLK032210:+:34103..35309

Molecular Weight (calculated)

21953.6 Da

IEP (calculated)

7.597

GRAVY (calculated)

-0.055

Length

201 amino acids

Sequence
(BLAST)

001: MEGGNKVIVT PHRHAGVFMI AKGRDCTILT KNLVPGKAVY NEERHSVQNE YGTEVEYRVW DPFRSDLASA VIGGADNIWI KPGAKVLYLG AASGTTVSHV
101: SDIAGPEGCV YAVEISEKSG RELVNMAKTR PNVTPIFEDA RNPAKYKMLV SMVDVICADL AQPDEAMILA HNPSFFLKMG GHFLLIINVS NNTSRPLIQI
201: K

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.