CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	39.22	20.62
GSMUA_Achr7P04500_001	Banana	cytosol	50.98	10.53
Os02t0821800-02	Rice	nucleus	49.02	10.2
TraesCS6A01G400300.1	Wheat	nucleus	43.14	10.05
CDX92724	Canola	nucleus, plastid	58.82	9.84
CDX89407	Canola	nucleus	58.82	9.68
CDY50191	Canola	mitochondrion	58.82	9.58
CDX94433	Canola	nucleus	58.82	9.49
CDY52366	Canola	nucleus	56.86	9.01
TraesCS7A01G479900.1	Wheat	cytosol	41.18	8.61
Zm00001d049508_P002	Maize	plastid	29.41	8.24
Os05t0176000-01	Rice	nucleus	49.02	8.09
Zm00001d049509_P001	Maize	plastid	23.53	8.05
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	41.18	7.84
EES06036	Sorghum	nucleus	47.06	7.82
TraesCS7B01G382200.1	Wheat	nucleus	41.18	7.32
TraesCS7D01G467000.1	Wheat	nucleus	41.18	7.27
TraesCS6B01G440500.1	Wheat	nucleus	43.14	7.14
TraesCS6D01G384500.1	Wheat	nucleus	43.14	7.12
CDY27064	Canola	cytosol	39.22	6.87
TraesCS4B01G122500.1	Wheat	cytosol	9.8	3.85
CDX94434	Canola	cytosol	17.65	3.47
CDY00531	Canola	cytosol, nucleus, plastid	11.76	3.19
KXG20767	Sorghum	nucleus	11.76	2.91
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	1.96	2.5
CDY27819	Canola	cytosol	9.8	2.49
TraesCS6A01G195300.1	Wheat	extracellular	3.92	1.68
TraesCS6D01G118100.1	Wheat	extracellular	3.92	1.68
TraesCS2B01G578600.1	Wheat	plastid	5.88	0.91

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.2	GO:A0A078GMK9	UniProt:A0A078GMK9	EnsemblPlants:CDY27815	ProteinID:CDY27815
ProteinID:CDY27815.1	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:GSBRNA2T00038624001	PFAM:PF01269
UniParc:UPI0004EB851E	:	:	:	:	:

Description

BnaC09g28420DBnaC09g28420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMK9]

Coordinates

chrLK032210:+:6259..6414

Molecular Weight (calculated)

5748.9 Da

IEP (calculated)

4.414

GRAVY (calculated)

-0.251

Length

51 amino acids

Sequence
(BLAST)

1: MSLTEIKPYP ATVQVNCIDS TFPAEAVFQS EAKKLQQVQF KPGEQVTFEP F

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.