Factsheet for TraesCS7B01G382200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G196000.2
TraesCS5B01G187400.1
TraesCS5D01G195000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	TraesCS5A01G196000.2	AT2G19670.1	17666011
AT4G25630.1	TraesCS5B01G187400.1	AT2G19670.1	17666011
AT4G25630.1	TraesCS5D01G195000.1	AT2G19670.1	17666011
AT4G25630.1	TraesCS5A01G196000.2	AT4G29510.1	17666011
AT4G25630.1	TraesCS5B01G187400.1	AT4G29510.1	17666011
AT4G25630.1	TraesCS5D01G195000.1	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G479900.1	Wheat	cytosol	85.02	100.0
Os02t0821800-02	Rice	nucleus	80.14	93.88
TraesCS7D01G467000.1	Wheat	nucleus	94.43	93.77
GSMUA_Achr7P04500_001	Banana	cytosol	77.0	89.47
GSMUA_AchrUn_...	Banana	cytosol	28.57	84.54
TraesCS6B01G440500.1	Wheat	nucleus	89.55	83.44
EES06036	Sorghum	nucleus	87.8	82.08
Os05t0176000-01	Rice	nucleus	88.15	81.88
HORVU7Hr1G108780.2	Barley	nucleus	91.99	81.73
KRH63857	Soybean	nucleus	82.58	77.45
KRH54109	Soybean	endoplasmic reticulum	81.53	76.72
AT5G52470.1	Thale cress	nucleus	81.53	75.97
VIT_16s0050g00880.t01	Wine grape	nucleus	83.28	75.63
PGSC0003DMT400026234	Potato	nucleus	82.23	75.16
Solyc03g025270.2.1	Tomato	nucleus	82.23	75.16
Bra019148.1-P	Field mustard	cytosol	79.44	74.27
AT4G25630.1	Thale cress	nucleus, plastid	82.58	74.06
KRH31252	Soybean	nucleus	80.84	73.65
KRG97622	Soybean	nucleus	80.14	73.48
Bra010455.1-P	Field mustard	cytosol	72.13	71.13
Bra013905.1-P	Field mustard	nucleus	76.66	70.97
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	71.78	70.79
PGSC0003DMT400010997	Potato	cytosol	35.19	67.33
PGSC0003DMT400053912	Potato	cytosol	60.28	65.53
PGSC0003DMT400077477	Potato	extracellular, golgi	37.28	59.44
AT5G52490.1	Thale cress	cytosol	58.54	57.53
Bra028311.1-P	Field mustard	cytosol	33.1	50.26
TraesCS4B01G122500.1	Wheat	cytosol	21.6	47.69
CDY27815	Canola	cytosol, nucleus, plastid	7.32	41.18
Zm00001d051885_P001	Maize	plasma membrane, plastid	82.58	38.1
TraesCS2B01G578600.1	Wheat	plastid	26.13	22.66

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	InterPro:Fibrillarin	InterPro:Fibrillarin_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	HAMAP:MF_00351
PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335	PANTHER:PTHR10335:SF6
InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	EnsemblPlantsGene:TraesCS7B01G382200	EnsemblPlants:TraesCS7B01G382200.1	SEG:seg

Description

No Description!

Coordinates

chr7B:-:648042287..648045080

Molecular Weight (calculated)

30579.0 Da

IEP (calculated)

10.646

GRAVY (calculated)

-0.297

Length

287 amino acids

Sequence
(BLAST)

001: MRPPARGGRG GRGFGGRGGR GGRGGRTPRG RGGRGGGGRG GAGMKGGSKV VVVPHKHDGV FIAKAKEDAL CTKNMVAGES VYGEKRVSVQ NEDGTKVEYR
101: VWNPFRSKLA AAVLGGVDNI WIAPGARVLY LGAASGTTVS HVSDIVGPTG LVYAVEFSHR SGRDLVNMAK KRTNVIPIIE DARHPAKYRM LVGMVDVIFS
201: DVAQPDQARI LALNASYFLK NGGHFVISIK ANCIDSTQAP EAVFAAEVEK LKLEQFKPSE QVTLEPFERD HACVVGGYRM PKKPKAT

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.