Factsheet for Bra013905.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89407	Canola	nucleus	100.0	100.0
Bra019148.1-P	Field mustard	cytosol	88.39	89.25
Bra010455.1-P	Field mustard	cytosol	81.61	86.94
GSMUA_Achr7P04500_001	Banana	cytosol	67.74	85.02
AT5G52470.1	Thale cress	nucleus	83.55	84.09
TraesCS6A01G400300.1	Wheat	nucleus	59.35	84.02
Os02t0821800-02	Rice	nucleus	66.13	83.67
TraesCS7A01G479900.1	Wheat	cytosol	65.48	83.2
Zm00001d013457_P001	Maize	cytosol	10.65	82.5
GSMUA_AchrUn_...	Banana	cytosol	24.84	79.38
Solyc03g025270.2.1	Tomato	nucleus	79.35	78.34
VIT_16s0050g00880.t01	Wine grape	nucleus	78.39	76.9
TraesCS7D01G467000.1	Wheat	nucleus	71.61	76.82
TraesCS7B01G382200.1	Wheat	nucleus	70.97	76.66
Os05t0176000-01	Rice	nucleus	75.48	75.73
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	9.68	75.0
HORVU6Hr1G091860.1	Barley	plasma membrane	74.19	74.92
EES06036	Sorghum	nucleus	73.87	74.59
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	70.0	74.57
KXG20767	Sorghum	nucleus	49.35	74.27
TraesCS6D01G384500.1	Wheat	nucleus	73.55	73.79
TraesCS6B01G440500.1	Wheat	nucleus	71.94	72.4
HORVU7Hr1G108780.2	Barley	nucleus	73.23	70.28
PGSC0003DMT400010997	Potato	cytosol	33.55	69.33
PGSC0003DMT400053912	Potato	cytosol	57.74	67.8
Zm00001d014473_P001	Maize	cytosol	22.9	63.39
PGSC0003DMT400077477	Potato	extracellular, golgi	36.77	63.33
Zm00001d051631_P001	Maize	cytosol	22.9	62.83
TraesCS6D01G118100.1	Wheat	extracellular	21.61	56.3
TraesCS6A01G195300.1	Wheat	extracellular	20.97	54.62
Bra028311.1-P	Field mustard	cytosol	31.94	52.38
Zm00001d050515_P001	Maize	cytosol	23.23	43.64
TraesCS4B01G122500.1	Wheat	cytosol	15.16	36.15
Zm00001d051885_P001	Maize	plasma membrane, plastid	69.68	34.73
Zm00001d053525_P001	Maize	cytosol	12.26	31.93
Zm00001d036744_P001	Maize	nucleus, plastid	21.61	28.76
Zm00001d001875_P001	Maize	nucleus	13.87	28.67
Zm00001d023745_P001	Maize	nucleus	13.87	28.67
Zm00001d044114_P001	Maize	nucleus	13.87	28.67
Zm00001d049509_P001	Maize	plastid	13.55	28.19
Zm00001d049508_P002	Maize	plastid	16.45	28.02
Zm00001d037391_P001	Maize	cytosol	20.32	25.51
TraesCS2B01G578600.1	Wheat	plastid	23.87	22.36

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	EnsemblPlantsGene:Bra013905	EnsemblPlants:Bra013905.1	EnsemblPlants:Bra013905.1-P
InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006364	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	UniProt:M4DBP5	HAMAP:MF_00351	PFAM:PF01269
PIRSF:PIRSF006540	PRINTS:PR00052	PANTHER:PTHR10335	PANTHER:PTHR10335:SF6	InterPro:SAM-dependent_MTases	SMART:SM01206
SUPFAM:SSF53335	UniParc:UPI0002546A08	SEG:seg	:	:	:

Description

AT4G25630 (E=4e-127) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding

Coordinates

chrA01:+:8387877..8389984

Molecular Weight (calculated)

32961.6 Da

IEP (calculated)

10.746

GRAVY (calculated)

-0.418

Length

310 amino acids

Sequence
(BLAST)

001: MRPPLTGGRG GGGFSGGRGG GGFSGGRSGG RGRGFGDRGG GRSGRGMRGR GERGRNGRGA PGRGGMKGGS KVIVEPHRHP GVFIAKGKED ALVTKNLVPG
101: EAVYNEKRIS VQNEDGTKTE YRVWNPFRSK LAAAILGGVD NIYIKPGSKV LYLGAASGTT VSHVSDIVGP EGCVYAVEFS HRSGRDLVNM AKKRTNIIPI
201: IEDARHPAKY RMLVGMVDVV FADVAQPDQA RIVALNSSFF LKTGGHFNIS IKANCIDSTV PAEAVFQSEV KKLQQEQFKP AEQVTLEPFE RDHACVVGTY
301: RAPKKTKVAA

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.