Factsheet for Zm00001d014473_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d020188_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	Zm00001d020188_P001	AT2G19670.1	17666011
AT4G25630.1	Zm00001d020188_P001	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051631_P001	Maize	cytosol	88.39	87.61
Zm00001d050515_P001	Maize	cytosol	82.14	55.76
PGSC0003DMT400010997	Potato	cytosol	51.79	38.67
Zm00001d053525_P001	Maize	cytosol	40.18	37.82
PGSC0003DMT400077477	Potato	extracellular, golgi	54.46	33.89
TraesCS4B01G122500.1	Wheat	cytosol	33.04	28.46
PGSC0003DMT400053912	Potato	cytosol	57.14	24.24
Bra010455.1-P	Field mustard	cytosol	62.5	24.05
AT5G52470.1	Thale cress	nucleus	66.07	24.03
Solyc03g025270.2.1	Tomato	nucleus	66.96	23.89
Bra019148.1-P	Field mustard	cytosol	65.18	23.78
KRH54109	Soybean	endoplasmic reticulum	64.29	23.61
PGSC0003DMT400026234	Potato	nucleus	66.07	23.57
KRH63857	Soybean	nucleus	64.29	23.53
VIT_16s0050g00880.t01	Wine grape	nucleus	65.18	23.1
KRG97622	Soybean	nucleus	64.29	23.0
Bra013905.1-P	Field mustard	nucleus	63.39	22.9
KRH31252	Soybean	nucleus	64.29	22.86
AT4G25630.1	Thale cress	nucleus, plastid	65.18	22.81
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	58.04	22.34
AT5G52490.1	Thale cress	cytosol	57.14	21.92
Bra028311.1-P	Field mustard	cytosol	29.46	17.46
Zm00001d051885_P001	Maize	plasma membrane, plastid	78.57	14.15
Zm00001d049508_P002	Maize	plastid	15.18	9.34
Zm00001d049509_P001	Maize	plastid	11.61	8.72
Zm00001d037391_P001	Maize	cytosol	12.5	5.67
Zm00001d036744_P001	Maize	nucleus, plastid	8.93	4.29
Zm00001d001875_P001	Maize	nucleus	0.0	0.0
Zm00001d013457_P001	Maize	cytosol	0.0	0.0
Zm00001d023745_P001	Maize	nucleus	0.0	0.0
Zm00001d044114_P001	Maize	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.200.20	Gene3D:3.40.50.150	MapMan:35.1	UniProt:A0A1D6GTM1	ProteinID:AQK66346.1	InterPro:Fibrillarin
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006364	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987
GO:GO:0016740	GO:GO:0032259	PFAM:PF01269	PRINTS:PR00052	PANTHER:PTHR10335	PANTHER:PTHR10335:SF4
InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI000844DFDF	EnsemblPlantsGene:Zm00001d014473	EnsemblPlants:Zm00001d014473_P001
EnsemblPlants:Zm00001d014473_T001	SEG:seg	:	:	:	:

Description

Mediator of RNA polymerase II transcription subunit 36a

Coordinates

chr5:-:49408149..49415823

Molecular Weight (calculated)

12256.9 Da

IEP (calculated)

10.303

GRAVY (calculated)

-0.014

Length

112 amino acids

Sequence
(BLAST)

001: MNGGSKAVVV VHKHAGVFIS KSKEDALCTK NMVSRESVYG EKHASVQVEY RVWNPFHSKL ATIVLGGVDN IWIAPGTRVL YLGAASGTIV SHMSDIQNPF
101: PFVVRMCNGR KK

Best Arabidopsis Sequence Match ( AT5G52470.2 )
(BLAST)

001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQNLGP ECLIFPQNWW TLCYLNQGQL YRLYSCSRSS LPERGEEAAT RAV

Arabidopsis Description

MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.