Factsheet for Zm00001d053525_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d020188_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	Zm00001d020188_P001	AT2G19670.1	17666011
AT4G25630.1	Zm00001d020188_P001	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050515_P001	Maize	cytosol	59.66	43.03
Zm00001d014473_P001	Maize	cytosol	37.82	40.18
Zm00001d051631_P001	Maize	cytosol	37.82	39.82
TraesCS4B01G122500.1	Wheat	cytosol	36.13	33.08
PGSC0003DMT400010997	Potato	cytosol	24.37	19.33
PGSC0003DMT400077477	Potato	extracellular, golgi	26.89	17.78
KRH54109	Soybean	endoplasmic reticulum	37.82	14.75
KRH63857	Soybean	nucleus	37.82	14.71
KRG97622	Soybean	nucleus	38.66	14.7
VIT_16s0050g00880.t01	Wine grape	nucleus	37.82	14.24
KRH31252	Soybean	nucleus	36.97	13.97
Bra010455.1-P	Field mustard	cytosol	31.93	13.06
PGSC0003DMT400026234	Potato	nucleus	34.45	13.06
Solyc03g025270.2.1	Tomato	nucleus	34.45	13.06
Bra019148.1-P	Field mustard	cytosol	33.61	13.03
PGSC0003DMT400053912	Potato	cytosol	28.57	12.88
Bra028311.1-P	Field mustard	cytosol	20.17	12.7
AT5G52490.1	Thale cress	cytosol	31.09	12.67
AT5G52470.1	Thale cress	nucleus	32.77	12.66
AT4G25630.1	Thale cress	nucleus, plastid	33.61	12.5
Bra013905.1-P	Field mustard	nucleus	31.93	12.26
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	29.41	12.03
Zm00001d051885_P001	Maize	plasma membrane, plastid	45.38	8.68
Zm00001d049509_P001	Maize	plastid	7.56	6.04
Zm00001d037391_P001	Maize	cytosol	10.08	4.86
Zm00001d036744_P001	Maize	nucleus, plastid	7.56	3.86
Zm00001d049508_P002	Maize	plastid	3.36	2.2
Zm00001d001875_P001	Maize	nucleus	2.52	2.0
Zm00001d023745_P001	Maize	nucleus	2.52	2.0
Zm00001d044114_P001	Maize	nucleus	1.68	1.33
Zm00001d013457_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.200.20	MapMan:35.2	UniProt:A0A1D6QPX4	ProteinID:AQK59582.1	InterPro:Fibrillarin	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740
GO:GO:0032259	PFAM:PF01269	UniParc:UPI000844D328	EnsemblPlantsGene:Zm00001d053525	EnsemblPlants:Zm00001d053525_P001	EnsemblPlants:Zm00001d053525_T001
SEG:seg	:	:	:	:	:

Description

Mediator of RNA polymerase II transcription subunit 36a

Coordinates

chr4:+:233023783..233024650

Molecular Weight (calculated)

12606.6 Da

IEP (calculated)

9.918

GRAVY (calculated)

0.167

Length

119 amino acids

Sequence
(BLAST)

001: MGATVAADLV VVEVREVKGG RGGRTHRGGR GGGMNGGSKA VVVVHKHVGV FISKSKEDAL CTKNMVSGES VYGEKCASVQ VRDCLFLMMI EQRLNTGCGT
101: PSVRSWLLLC LVVLTTSRL

Best Arabidopsis Sequence Match ( AT5G52470.2 )
(BLAST)

001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQNLGP ECLIFPQNWW TLCYLNQGQL YRLYSCSRSS LPERGEEAAT RAV

Arabidopsis Description

MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.