Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d020188_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25630.1 | Zm00001d020188_P001 | AT2G19670.1 | 17666011 |
| AT4G25630.1 | Zm00001d020188_P001 | AT4G29510.1 | 17666011 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023745_P001 | Maize | nucleus | 64.38 | 100.0 |
| Zm00001d001875_P001 | Maize | nucleus | 64.38 | 100.0 |
| Zm00001d013457_P001 | Maize | cytosol | 16.74 | 97.5 |
| Zm00001d044114_P001 | Maize | nucleus | 62.66 | 97.33 |
| TraesCS6D01G118100.1 | Wheat | extracellular | 12.88 | 25.21 |
| TraesCS6A01G195300.1 | Wheat | extracellular | 12.88 | 25.21 |
| AT5G52470.1 | Thale cress | nucleus | 30.9 | 23.38 |
| Bra022595.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 29.18 | 23.37 |
| KRH54109 | Soybean | endoplasmic reticulum | 30.47 | 23.28 |
| KRH63857 | Soybean | nucleus | 30.47 | 23.2 |
| Bra010455.1-P | Field mustard | cytosol | 28.76 | 23.02 |
| KRG97622 | Soybean | nucleus | 30.47 | 22.68 |
| KRH31252 | Soybean | nucleus | 30.47 | 22.54 |
| Bra019148.1-P | Field mustard | cytosol | 29.61 | 22.48 |
| Solyc03g025270.2.1 | Tomato | nucleus | 30.04 | 22.29 |
| PGSC0003DMT400026234 | Potato | nucleus | 30.04 | 22.29 |
| AT4G25630.1 | Thale cress | nucleus, plastid | 30.47 | 22.19 |
| PGSC0003DMT400053912 | Potato | cytosol | 24.89 | 21.97 |
| VIT_16s0050g00880.t01 | Wine grape | nucleus | 29.61 | 21.84 |
| Bra013905.1-P | Field mustard | nucleus | 28.76 | 21.61 |
| PGSC0003DMT400010997 | Potato | cytosol | 13.73 | 21.33 |
| Zm00001d037391_P001 | Maize | cytosol | 21.46 | 20.24 |
| AT5G52490.1 | Thale cress | cytosol | 25.32 | 20.21 |
| Bra028311.1-P | Field mustard | cytosol | 15.88 | 19.58 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 14.16 | 18.33 |
| Zm00001d051885_P001 | Maize | plasma membrane, plastid | 30.9 | 11.58 |
| TraesCS2B01G578600.1 | Wheat | plastid | 14.59 | 10.27 |
| Zm00001d014473_P001 | Maize | cytosol | 4.29 | 8.93 |
| Zm00001d051631_P001 | Maize | cytosol | 4.29 | 8.85 |
| Zm00001d049508_P002 | Maize | plastid | 6.87 | 8.79 |
| Zm00001d049509_P001 | Maize | plastid | 5.15 | 8.05 |
| Zm00001d053525_P001 | Maize | cytosol | 3.86 | 7.56 |
| Zm00001d050515_P001 | Maize | cytosol | 5.15 | 7.27 |
Protein Annotations
| Gene3D:3.40.50.150 | MapMan:35.1 | UniProt:A0A1D6LQV3 | ProteinID:AQK81843.1 | InterPro:Fibrillarin | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006364 |
| GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0032259 | PFAM:PF01269 | PRINTS:PR00052 | PANTHER:PTHR10335 | PANTHER:PTHR10335:SF6 | InterPro:SAM-dependent_MTases |
| SMART:SM01206 | SUPFAM:SSF53335 | UniParc:UPI0008423A9A | EnsemblPlantsGene:Zm00001d036744 | EnsemblPlants:Zm00001d036744_P001 | EnsemblPlants:Zm00001d036744_T001 |
Description
Mediator of RNA polymerase II transcription subunit 36a
Coordinates
chr6:-:99728410..99730769
Molecular Weight (calculated)
26554.7 Da
IEP (calculated)
6.910
GRAVY (calculated)
-0.265
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSPTVQAFV CPCNWYKTES RCPHDLQSSN ACSINDRWTT RVCCLNISAF SAHRNHWTFI QKCERNSCHI VEFSHRSGRD LVNMAKKRTN VIPIIEDVRH
101: PARYQMLVGM VDVIFSDVAQ PNQTHENSED IVFLQPLDNK IYILVKLVLT QYLIPRLQAQ DSKRDYLDHS SGSGVGLYGC TECEADVVAL IEEEVSRVGE
201: AARRFEWIGG EVLLFLPLQS QQILNGNTSP RSR
101: PARYQMLVGM VDVIFSDVAQ PNQTHENSED IVFLQPLDNK IYILVKLVLT QYLIPRLQAQ DSKRDYLDHS SGSGVGLYGC TECEADVVAL IEEEVSRVGE
201: AARRFEWIGG EVLLFLPLQS QQILNGNTSP RSR
001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA
Arabidopsis Description
MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.