Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d020188_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25630.1 | Zm00001d020188_P001 | AT2G19670.1 | 17666011 |
| AT4G25630.1 | Zm00001d020188_P001 | AT4G29510.1 | 17666011 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013457_P001 | Maize | cytosol | 26.0 | 97.5 |
| Zm00001d001875_P001 | Maize | nucleus | 97.33 | 97.33 |
| Zm00001d023745_P001 | Maize | nucleus | 97.33 | 97.33 |
| Zm00001d036744_P001 | Maize | nucleus, plastid | 97.33 | 62.66 |
| KRH54109 | Soybean | endoplasmic reticulum | 31.33 | 15.41 |
| Zm00001d037391_P001 | Maize | cytosol | 25.33 | 15.38 |
| KRH63857 | Soybean | nucleus | 31.33 | 15.36 |
| AT5G52470.1 | Thale cress | nucleus | 31.33 | 15.26 |
| KRG97622 | Soybean | nucleus | 31.33 | 15.02 |
| KRH31252 | Soybean | nucleus | 31.33 | 14.92 |
| Bra022595.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 28.67 | 14.78 |
| Bra010455.1-P | Field mustard | cytosol | 28.67 | 14.78 |
| VIT_16s0050g00880.t01 | Wine grape | nucleus | 30.67 | 14.56 |
| AT5G52490.1 | Thale cress | cytosol | 28.0 | 14.38 |
| AT4G25630.1 | Thale cress | nucleus, plastid | 30.67 | 14.38 |
| Bra019148.1-P | Field mustard | cytosol | 29.33 | 14.33 |
| Solyc03g025270.2.1 | Tomato | nucleus | 30.0 | 14.33 |
| PGSC0003DMT400026234 | Potato | nucleus | 30.0 | 14.33 |
| TraesCS6A01G195300.1 | Wheat | extracellular | 11.33 | 14.29 |
| Bra013905.1-P | Field mustard | nucleus | 28.67 | 13.87 |
| PGSC0003DMT400053912 | Potato | cytosol | 23.33 | 13.26 |
| TraesCS6D01G118100.1 | Wheat | extracellular | 10.0 | 12.61 |
| Bra028311.1-P | Field mustard | cytosol | 14.67 | 11.64 |
| Zm00001d051885_P001 | Maize | plasma membrane, plastid | 31.33 | 7.56 |
| PGSC0003DMT400010997 | Potato | cytosol | 7.33 | 7.33 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 8.0 | 6.67 |
| Zm00001d049508_P002 | Maize | plastid | 6.67 | 5.49 |
| Zm00001d049509_P001 | Maize | plastid | 5.33 | 5.37 |
| TraesCS2B01G578600.1 | Wheat | plastid | 10.67 | 4.83 |
| Zm00001d053525_P001 | Maize | cytosol | 1.33 | 1.68 |
| Zm00001d014473_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d050515_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d051631_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.150 | MapMan:35.1 | UniProt:A0A1D6NHU2 | InterPro:Fibrillarin | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008033 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0032259 |
| ProteinID:ONM39948.1 | PFAM:PF01269 | PANTHER:PTHR10335 | PANTHER:PTHR10335:SF6 | InterPro:SAM-dependent_MTases | SMART:SM01206 |
| SUPFAM:SSF53335 | UniParc:UPI0002213664 | EnsemblPlantsGene:Zm00001d044114 | EnsemblPlants:Zm00001d044114_P001 | EnsemblPlants:Zm00001d044114_T001 | : |
Description
Mediator of RNA polymerase II transcription subunit 36a
Coordinates
chr3:-:219643181..219645513
Molecular Weight (calculated)
16831.3 Da
IEP (calculated)
4.627
GRAVY (calculated)
-0.105
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKRTNVIP IIEDVRHPAR YQMLVGMVDV IFSDVAQPNQ THENSEDIVF LQPLDNGIYI LVKLVLTQYL IPRLQAQDSK RDYLDRSSGS GVGLYGCTEC
101: EADVVALIEE EVPRVGEAAR RFEWIGGEVL LFLPLQSQQI LNGNTSPCSR
101: EADVVALIEE EVPRVGEAAR RFEWIGGEVL LFLPLQSQQI LNGNTSPCSR
001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS
Arabidopsis Description
MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.