CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54109	Soybean	endoplasmic reticulum	98.04	98.36
Zm00001d013457_P001	Maize	cytosol	11.76	90.0
GSMUA_Achr7P04500_001	Banana	cytosol	72.55	89.88
KRH31252	Soybean	nucleus	91.83	89.21
KRG97622	Soybean	nucleus	91.18	89.14
TraesCS6A01G400300.1	Wheat	nucleus	63.73	89.04
Os02t0821800-02	Rice	nucleus	70.26	87.76
TraesCS7A01G479900.1	Wheat	cytosol	69.28	86.89
GSMUA_AchrUn_...	Banana	cytosol	26.47	83.51
TraesCS7B01G382200.1	Wheat	nucleus	77.45	82.58
Os05t0176000-01	Rice	nucleus	82.35	81.55
Solyc03g025270.2.1	Tomato	nucleus	83.33	81.21
VIT_16s0050g00880.t01	Wine grape	nucleus	83.66	81.01
TraesCS7D01G467000.1	Wheat	nucleus	76.47	80.97
HORVU6Hr1G091860.1	Barley	plasma membrane	80.39	80.13
EES06036	Sorghum	nucleus	79.74	79.48
TraesCS6D01G384500.1	Wheat	nucleus	80.07	79.29
TraesCS6B01G440500.1	Wheat	nucleus	78.76	78.25
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	10.13	77.5
KXG20767	Sorghum	nucleus	50.65	75.24
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	70.26	73.88
HORVU7Hr1G108780.2	Barley	nucleus	77.78	73.68
CDY27064	Canola	cytosol	69.61	73.2
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	62.42	71.27
PGSC0003DMT400010997	Potato	cytosol	34.64	70.67
PGSC0003DMT400053912	Potato	cytosol	60.78	70.45
Zm00001d014473_P001	Maize	cytosol	23.53	64.29
Zm00001d051631_P001	Maize	cytosol	23.53	63.72
CDY27819	Canola	cytosol	41.83	63.68
PGSC0003DMT400077477	Potato	extracellular, golgi	37.25	63.33
AT5G52490.1	Thale cress	cytosol	58.17	60.96
TraesCS6D01G118100.1	Wheat	extracellular	22.55	57.98
TraesCS6A01G195300.1	Wheat	extracellular	22.22	57.14
CDY00531	Canola	cytosol, nucleus, plastid	30.72	50.0
Bra028311.1-P	Field mustard	cytosol	30.72	49.74
Zm00001d050515_P001	Maize	cytosol	25.49	47.27
TraesCS4B01G122500.1	Wheat	cytosol	17.65	41.54
Zm00001d053525_P001	Maize	cytosol	14.71	37.82
Zm00001d051885_P001	Maize	plasma membrane, plastid	74.18	36.5
Zm00001d044114_P001	Maize	nucleus	15.36	31.33
Zm00001d023745_P001	Maize	nucleus	15.36	31.33
Zm00001d001875_P001	Maize	nucleus	15.36	31.33
Zm00001d036744_P001	Maize	nucleus, plastid	23.2	30.47
Zm00001d049509_P001	Maize	plastid	14.38	29.53
Zm00001d049508_P002	Maize	plastid	17.32	29.12
Zm00001d037391_P001	Maize	cytosol	21.57	26.72
TraesCS2B01G578600.1	Wheat	plastid	23.86	22.05

Protein Annotations

EntrezGene:100797625	MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	EMBL:ACUP02002719	InterPro:Fibrillarin
InterPro:Fibrillarin_CS	EnsemblPlantsGene:GLYMA_04G200700	GO:GO:0000494	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0006464	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008649	GO:GO:0009987	GO:GO:0015030
GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	GO:GO:0031167	GO:GO:0031428	GO:GO:0032040
GO:GO:1990258	GO:GO:1990259	UniProt:I1JXQ3	EnsemblPlants:KRH63857	ProteinID:KRH63857	ProteinID:KRH63857.1
HAMAP:MF_00351	PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335
PANTHER:PTHR10335:SF6	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI0002339500	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:47349422..47352225

Molecular Weight (calculated)

32437.9 Da

IEP (calculated)

10.606

GRAVY (calculated)

-0.445

Length

306 amino acids

Sequence
(BLAST)

001: MAPPRGGGFR GGRGDRGRGR GGGGGRGGDR GTPFKARGGG RGGGRGGGGR GGGRGGGRGG MKGGSKVVVQ PHRHDGIFIA KGKEDALVTK NLVPGEAVYN
101: EKRITVQNED GSKDEYRVWN PFRSKLAAAI LGGVDNIWIK PGARVLYLGA ASGTTVSHVS DVVGPTGVVY AVEFSHRSGR DLVNMAKKRT NVIPIIEDAR
201: HPAKYRMLVG MVDVIFSDVA QPDQARILGL NASYYLKAGG HFVISIKANC IDSTVPAEAV FESEVNKLKA DQFKPFEQVT LEPFERDHAC VVGGYRMPKK
301: KKDAAE

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.