CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27064	Canola	cytosol	97.39	89.69
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	96.64	89.0
PGSC0003DMT400010997	Potato	cytosol	37.31	66.67
CDX92724	Canola	nucleus, plastid	73.88	64.92
Solyc03g025270.2.1	Tomato	nucleus	74.63	63.69
CDY50191	Canola	mitochondrion	73.88	63.26
CDX94433	Canola	nucleus	74.25	62.97
CDX89407	Canola	nucleus	72.76	62.9
CDY52366	Canola	nucleus	75.37	62.73
KRH63857	Soybean	nucleus	71.27	62.42
KRH54109	Soybean	endoplasmic reticulum	70.9	62.3
CDY27819	Canola	cytosol	46.64	62.19
CDX94434	Canola	cytosol	60.07	62.16
VIT_16s0050g00880.t01	Wine grape	nucleus	73.13	62.03
KRH31252	Soybean	nucleus	71.27	60.63
KRG97622	Soybean	nucleus	70.52	60.38
PGSC0003DMT400077477	Potato	extracellular, golgi	38.43	57.22
PGSC0003DMT400053912	Potato	cytosol	54.1	54.92
AT5G52490.1	Thale cress	cytosol	56.72	52.05
CDY00531	Canola	cytosol, nucleus, plastid	33.96	48.4
CDY27815	Canola	cytosol, nucleus, plastid	7.84	41.18

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	GO:A0A078DT45	EnsemblPlants:CDX91654	ProteinID:CDX91654
ProteinID:CDX91654.1	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00153109001	PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052
PANTHER:PTHR10335	PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI0004EB822F
SEG:seg	:	:	:	:	:

Description

BnaC02g15060D

Coordinates

chrLK031868:+:1490416..1492511

Molecular Weight (calculated)

28940.8 Da

IEP (calculated)

10.104

GRAVY (calculated)

-0.470

Length

268 amino acids

Sequence
(BLAST)

001: MRSPLRGRGR GEGSAMRGGG RGPRGRGPGG RVPGGRGPRS EPGGMKGGNK VIVTPHRHEG VFTGKGKDEV ILTKNLVPGE SVYNEKRISV QNEDGTKVEY
101: RVWNPFCSKL AAAIFGGLDD IWIKPGAKVL YLGAASGTSV SHVSDIVGPE GCVYAVEFSP RSGRDLVNMA KKRRNVVPII EDARHPAKYR MLVSMVDVIF
201: ADVAQPYQAN CIDGTMPAET VFSNEVKKLQ ADELKPAEQI TLEPYERDHA CVVGGYRVPR KQKTATAS

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.