CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50191	Canola	mitochondrion	93.77	91.37
CDY52366	Canola	nucleus	92.79	87.89
CDX89407	Canola	nucleus	88.52	87.1
AT5G52470.1	Thale cress	nucleus	86.89	86.04
CDX94433	Canola	nucleus	88.52	85.44
Solyc03g025270.2.1	Tomato	nucleus	80.98	78.66
VIT_16s0050g00880.t01	Wine grape	nucleus	80.0	77.22
CDY27064	Canola	cytosol	71.48	74.91
CDX94434	Canola	cytosol	63.61	74.9
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	64.92	73.88
PGSC0003DMT400010997	Potato	cytosol	34.43	70.0
PGSC0003DMT400053912	Potato	cytosol	59.02	68.18
CDY27819	Canola	cytosol	44.92	68.16
PGSC0003DMT400077477	Potato	extracellular, golgi	36.39	61.67
CDY27815	Canola	cytosol, nucleus, plastid	9.84	58.82
CDY00531	Canola	cytosol, nucleus, plastid	33.77	54.79

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	GO:A0A078DW99	EnsemblPlants:CDX92724	ProteinID:CDX92724
ProteinID:CDX92724.1	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00154544001	HAMAP:MF_00351	PFAM:PF01269	PIRSF:PIRSF006540
PRINTS:PR00052	PANTHER:PTHR10335	PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335
UniParc:UPI0004EDFF49	SEG:seg	:	:	:	:

Description

BnaC07g39820D

Coordinates

chrLK031873:+:518736..520964

Molecular Weight (calculated)

32535.3 Da

IEP (calculated)

10.746

GRAVY (calculated)

-0.319

Length

305 amino acids

Sequence
(BLAST)

001: MRPPLTGGRG GGGFSGGRGD SSGGRGRGGG RRGFGDRGRG RGMRGVRGRG RGVPARGGMK GGSKVIVEPH RHAGVFIAKG KEDALVTKNL VPGEAVYNEK
101: RISVQNEDGT KIEYRVWNPF RSKLAAAILG GVDNIYIKPG AKVLYLGAAS GTTVSHVSDI VGPEGCVYAV EFSHRSGRDL VNMAKKRTNV IPIIEDARHP
201: AKYRMLVGMV DVIFADVAQP DQARIVALNA NFFLKTGGHF VISIKANCID STVPAEAVFQ SEVKKLQQEQ FKPAEQVTLE PFERDHACVV GTYRAPKKAK
301: AATAA

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.