Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013457_P001 | Maize | cytosol | 11.69 | 90.0 |
| GSMUA_Achr7P04500_001 | Banana | cytosol | 70.45 | 87.85 |
| TraesCS7A01G479900.1 | Wheat | cytosol | 69.48 | 87.7 |
| TraesCS6A01G400300.1 | Wheat | nucleus | 62.34 | 87.67 |
| Os02t0821800-02 | Rice | nucleus | 69.48 | 87.35 |
| CDX92724 | Canola | nucleus, plastid | 86.04 | 86.89 |
| GSMUA_AchrUn_... | Banana | cytosol | 26.95 | 85.57 |
| Bra019148.1-P | Field mustard | cytosol | 84.42 | 84.69 |
| CDX94433 | Canola | nucleus | 86.36 | 84.18 |
| Bra013905.1-P | Field mustard | nucleus | 84.09 | 83.55 |
| CDX89407 | Canola | nucleus | 84.09 | 83.55 |
| AT4G25630.1 | Thale cress | nucleus, plastid | 86.69 | 83.44 |
| CDY50191 | Canola | mitochondrion | 84.74 | 83.39 |
| Bra010455.1-P | Field mustard | cytosol | 78.25 | 82.82 |
| TraesCS7D01G467000.1 | Wheat | nucleus | 77.6 | 82.7 |
| CDY52366 | Canola | nucleus | 86.36 | 82.61 |
| TraesCS7B01G382200.1 | Wheat | nucleus | 75.97 | 81.53 |
| Solyc03g025270.2.1 | Tomato | nucleus | 82.79 | 81.21 |
| EES06036 | Sorghum | nucleus | 79.22 | 79.48 |
| VIT_16s0050g00880.t01 | Wine grape | nucleus | 80.84 | 78.8 |
| Os05t0176000-01 | Rice | nucleus | 78.57 | 78.32 |
| KXG20767 | Sorghum | nucleus | 52.27 | 78.16 |
| HORVU6Hr1G091860.1 | Barley | plasma membrane | 77.27 | 77.52 |
| TraesCS6D01G384500.1 | Wheat | nucleus | 76.3 | 76.05 |
| TraesCS6B01G440500.1 | Wheat | nucleus | 75.65 | 75.65 |
| HORVU7Hr1G108780.2 | Barley | nucleus | 78.9 | 75.23 |
| CDX94434 | Canola | cytosol | 62.99 | 74.9 |
| HORVU5Hr1G060300.1 | Barley | cytosol, golgi, mitochondrion, nucleus | 9.42 | 72.5 |
| PGSC0003DMT400010997 | Potato | cytosol | 35.06 | 72.0 |
| PGSC0003DMT400053912 | Potato | cytosol | 58.44 | 68.18 |
| Zm00001d014473_P001 | Maize | cytosol | 24.03 | 66.07 |
| Zm00001d051631_P001 | Maize | cytosol | 24.03 | 65.49 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 37.01 | 63.33 |
| AT5G52490.1 | Thale cress | cytosol | 59.74 | 63.01 |
| TraesCS6D01G118100.1 | Wheat | extracellular | 22.08 | 57.14 |
| TraesCS6A01G195300.1 | Wheat | extracellular | 21.43 | 55.46 |
| Zm00001d050515_P001 | Maize | cytosol | 24.35 | 45.45 |
| Zm00001d051885_P001 | Maize | plasma membrane, plastid | 73.38 | 36.33 |
| TraesCS4B01G122500.1 | Wheat | cytosol | 15.26 | 36.15 |
| Zm00001d053525_P001 | Maize | cytosol | 12.66 | 32.77 |
| Zm00001d044114_P001 | Maize | nucleus | 15.26 | 31.33 |
| Zm00001d023745_P001 | Maize | nucleus | 15.26 | 31.33 |
| Zm00001d001875_P001 | Maize | nucleus | 15.26 | 31.33 |
| Zm00001d036744_P001 | Maize | nucleus, plastid | 23.38 | 30.9 |
| Zm00001d049508_P002 | Maize | plastid | 17.53 | 29.67 |
| Zm00001d049509_P001 | Maize | plastid | 14.29 | 29.53 |
| Zm00001d037391_P001 | Maize | cytosol | 20.78 | 25.91 |
| TraesCS2B01G578600.1 | Wheat | plastid | 23.7 | 22.05 |
Protein Annotations
| MapMan:17.1.1.2.1.5.1 | Gene3D:3.30.200.20 | Gene3D:3.40.50.150 | EntrezGene:835323 | ProteinID:AAG10152.1 | ProteinID:AED96217.1 |
| ProteinID:AED96218.1 | EMBL:AF187871 | EMBL:AF233443 | EMBL:AF263383 | EMBL:AK230239 | ArrayExpress:AT5G52470 |
| EnsemblPlantsGene:AT5G52470 | RefSeq:AT5G52470 | TAIR:AT5G52470 | RefSeq:AT5G52470-TAIR-G | EnsemblPlants:AT5G52470.1 | TAIR:AT5G52470.1 |
| EMBL:AY139769 | ProteinID:BAB10544.1 | EMBL:BT004541 | Symbol:FIB1 | InterPro:Fibrillarin | GO:GO:0000494 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005730 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006364 | GO:GO:0006464 | GO:GO:0008033 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008649 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015030 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0030515 | GO:GO:0030529 |
| GO:GO:0031167 | GO:GO:0031428 | GO:GO:0032040 | GO:GO:0032259 | GO:GO:1990258 | GO:GO:1990259 |
| HAMAP:MF_00351 | RefSeq:NP_001119418.1 | RefSeq:NP_568772.3 | PFAM:PF01269 | PIRSF:PIRSF006540 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00052 | PANTHER:PTHR10335 | PANTHER:PTHR10335:SF6 | UniProt:Q9FEF8 | InterPro:SAM-dependent_MTases | SMART:SM01206 |
| SUPFAM:SSF53335 | UniParc:UPI000000C39D | SEG:seg | : | : | : |
Description
MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
Coordinates
chr5:+:21294147..21296819
Molecular Weight (calculated)
32831.5 Da
IEP (calculated)
10.799
GRAVY (calculated)
-0.392
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.