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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, golgi, nucleus, cytosol

Predictor Summary:
  • plastid 1
  • golgi 1
  • mitochondrion 1
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, mitochondrion, nucleus
Any Predictor:cytosol, golgi, mitochondrion, nucleus, plastid
iPSORT:plastid
MultiLoc:golgi
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU5Hr1G056790.7

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G25630.1 HORVU5Hr1G056790.7 AT2G19670.1 17666011
AT4G25630.1 HORVU5Hr1G056790.7 AT4G29510.1 17666011
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400010997 Potato cytosol 55.0 14.67
PGSC0003DMT400077477 Potato extracellular, golgi 60.0 13.33
HORVU6Hr1G091860.1 Barley plasma membrane 80.0 10.42
KRH54109 Soybean endoplasmic reticulum 77.5 10.16
KRH63857 Soybean nucleus 77.5 10.13
Bra010455.1-P Field mustard cytosol 72.5 9.97
KRG97622 Soybean nucleus 77.5 9.9
KRH31252 Soybean nucleus 77.5 9.84
Bra019148.1-P Field mustard cytosol 75.0 9.77
Bra013905.1-P Field mustard nucleus 75.0 9.68
HORVU7Hr1G108780.2 Barley nucleus 77.5 9.6
Solyc03g025270.2.1 Tomato nucleus 75.0 9.55
PGSC0003DMT400026234 Potato nucleus 75.0 9.55
VIT_16s0050g00880.t01 Wine grape nucleus 75.0 9.49
AT5G52470.1 Thale cress nucleus 72.5 9.42
AT4G25630.1 Thale cress nucleus, plastid 75.0 9.38
PGSC0003DMT400053912 Potato cytosol 60.0 9.09
Bra022595.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 65.0 8.93
AT5G52490.1 Thale cress cytosol 62.5 8.56
CDY27815 Canola cytosol, nucleus, plastid 2.5 1.96
Bra028311.1-P Field mustard cytosol 0.0 0.0
Protein Annotations
Gene3D:3.40.50.150MapMan:35.2UniProt:A0A287REW6InterPro:FibrillarinGO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003824GO:GO:0005488GO:GO:0006139GO:GO:0006364GO:GO:0008150
GO:GO:0008152GO:GO:0008168GO:GO:0009987GO:GO:0016740GO:GO:0032259EnsemblPlantsGene:HORVU5Hr1G060300
EnsemblPlants:HORVU5Hr1G060300.1PFAM:PF01269PANTHER:PTHR10335PANTHER:PTHR10335:SF6InterPro:SAM-dependent_MTasesSUPFAM:SSF53335
UniParc:UPI000B479614:::::
Description
No Description!
Coordinates
chrchr5H:-:471969597..471970474
Molecular Weight (calculated)
4145.1 Da
IEP (calculated)
7.707
GRAVY (calculated)
0.502
Length
40 amino acids
Sequence
(BLAST)
1: MLGGVDNIWI APRTRVLYLG AASGTTMAHV SDIVGPAHVP
Best Arabidopsis Sequence Match ( AT5G52470.1 )
(BLAST)
001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS
Arabidopsis Description
MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.