Factsheet for Bra019148.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50191	Canola	mitochondrion	97.39	95.53
Bra013905.1-P	Field mustard	nucleus	89.25	88.39
Bra010455.1-P	Field mustard	cytosol	82.08	86.6
GSMUA_Achr7P04500_001	Banana	cytosol	68.73	85.43
Zm00001d013457_P001	Maize	cytosol	11.07	85.0
TraesCS7A01G479900.1	Wheat	cytosol	67.43	84.84
Os02t0821800-02	Rice	nucleus	67.43	84.49
TraesCS6A01G400300.1	Wheat	nucleus	60.26	84.47
AT5G52470.1	Thale cress	nucleus	84.69	84.42
GSMUA_AchrUn_...	Banana	cytosol	25.73	81.44
TraesCS7D01G467000.1	Wheat	nucleus	74.92	79.58
TraesCS7B01G382200.1	Wheat	nucleus	74.27	79.44
Solyc03g025270.2.1	Tomato	nucleus	80.13	78.34
VIT_16s0050g00880.t01	Wine grape	nucleus	79.15	76.9
Os05t0176000-01	Rice	nucleus	76.87	76.38
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	72.31	76.29
HORVU6Hr1G091860.1	Barley	plasma membrane	76.22	76.22
EES06036	Sorghum	nucleus	75.9	75.9
KXG20767	Sorghum	nucleus	50.49	75.24
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	9.77	75.0
TraesCS6D01G384500.1	Wheat	nucleus	74.92	74.43
TraesCS6B01G440500.1	Wheat	nucleus	73.62	73.38
HORVU7Hr1G108780.2	Barley	nucleus	74.27	70.59
PGSC0003DMT400053912	Potato	cytosol	59.93	69.7
PGSC0003DMT400010997	Potato	cytosol	33.88	69.33
Zm00001d014473_P001	Maize	cytosol	23.78	65.18
Zm00001d051631_P001	Maize	cytosol	23.78	64.6
PGSC0003DMT400077477	Potato	extracellular, golgi	36.81	62.78
TraesCS6D01G118100.1	Wheat	extracellular	21.82	56.3
TraesCS6A01G195300.1	Wheat	extracellular	20.85	53.78
Bra028311.1-P	Field mustard	cytosol	32.57	52.91
Zm00001d050515_P001	Maize	cytosol	24.43	45.45
TraesCS4B01G122500.1	Wheat	cytosol	16.94	40.0
Zm00001d051885_P001	Maize	plasma membrane, plastid	72.64	35.85
Zm00001d053525_P001	Maize	cytosol	13.03	33.61
Zm00001d036744_P001	Maize	nucleus, plastid	22.48	29.61
Zm00001d001875_P001	Maize	nucleus	14.33	29.33
Zm00001d023745_P001	Maize	nucleus	14.33	29.33
Zm00001d044114_P001	Maize	nucleus	14.33	29.33
Zm00001d049509_P001	Maize	plastid	13.68	28.19
Zm00001d049508_P002	Maize	plastid	16.61	28.02
Zm00001d037391_P001	Maize	cytosol	21.82	27.13
TraesCS2B01G578600.1	Wheat	plastid	24.76	22.96

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	EnsemblPlantsGene:Bra019148	EnsemblPlants:Bra019148.1	EnsemblPlants:Bra019148.1-P
InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006364	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	UniProt:M4DRK5	HAMAP:MF_00351	PFAM:PF01269
PIRSF:PIRSF006540	PRINTS:PR00052	PANTHER:PTHR10335	PANTHER:PTHR10335:SF6	InterPro:SAM-dependent_MTases	SMART:SM01206
SUPFAM:SSF53335	UniParc:UPI000254114A	SEG:seg	:	:	:

Description

AT4G25630 (E=3e-129) FIB2, ATFIB2 | FIB2 (FIBRILLARIN 2); snoRNA binding

Coordinates

chrA03:+:26060432..26062453

Molecular Weight (calculated)

32757.4 Da

IEP (calculated)

10.682

GRAVY (calculated)

-0.380

Length

307 amino acids

Sequence
(BLAST)

001: MRSPLTGGRG GGEFSGGRGG RGGSSGGRGR GFGDRGRGRG MRGRGRGEPG RGRGAPGRGG MKGGSKVIVE PHRHAGVFIA KSKEDALVTK NLVPGEAVYN
101: EKRISVQNED GTKTEYRVWN PFRSKLAAAI LGGVDNIYIK PGAKVLYLGA ASGTTVSHVS DIVGPEGCVY AVEFSHRSGR DLVNMAKKRT NVIPIIEDAR
201: HPTKYRMLVG MVDVIFADVA QPDQARIVAL NANFFLKTGG HFVISIKANC IDSTVPAEAV FQSEVKKLQQ EQFKPAEQVT LEPFERDHAC VVGTYRAPKK
301: VKAATAA

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.