Factsheet for Os05t0176000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
nucleus: 18203134
nucleus: 19621931
nucleus: 23303719
nucleus: 23777608

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os09t0359800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	Os09t0359800-01	AT2G19670.1	17666011
AT4G25630.1	Os09t0359800-01	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0821800-02	Rice	nucleus	78.32	98.78
TraesCS6A01G400300.1	Wheat	nucleus	68.28	96.35
TraesCS7A01G479900.1	Wheat	cytosol	74.76	94.67
GSMUA_Achr7P04500_001	Banana	cytosol	73.46	91.9
TraesCS7D01G467000.1	Wheat	nucleus	83.17	88.93
TraesCS7B01G382200.1	Wheat	nucleus	81.88	88.15
GSMUA_AchrUn_...	Banana	cytosol	27.51	87.63
TraesCS6D01G384500.1	Wheat	nucleus	86.41	86.41
HORVU6Hr1G091860.1	Barley	plasma membrane	85.76	86.32
EES06036	Sorghum	nucleus	85.44	85.99
TraesCS6B01G440500.1	Wheat	nucleus	84.79	85.06
KRH63857	Soybean	nucleus	81.55	82.35
KRG97622	Soybean	nucleus	83.17	82.11
KRH54109	Soybean	endoplasmic reticulum	80.58	81.64
Solyc03g025270.2.1	Tomato	nucleus	81.88	80.57
KRH31252	Soybean	nucleus	81.88	80.32
VIT_16s0050g00880.t01	Wine grape	nucleus	81.88	80.06
HORVU7Hr1G108780.2	Barley	nucleus	83.17	79.57
PGSC0003DMT400026234	Potato	nucleus	80.58	79.3
AT5G52470.1	Thale cress	nucleus	78.32	78.57
Bra019148.1-P	Field mustard	cytosol	76.38	76.87
AT4G25630.1	Thale cress	nucleus, plastid	78.96	76.25
Bra013905.1-P	Field mustard	nucleus	75.73	75.48
Bra010455.1-P	Field mustard	cytosol	70.23	74.57
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	68.28	72.51
PGSC0003DMT400053912	Potato	cytosol	58.58	68.56
PGSC0003DMT400010997	Potato	cytosol	33.01	68.0
AT5G52490.1	Thale cress	cytosol	56.96	60.27
PGSC0003DMT400077477	Potato	extracellular, golgi	34.95	60.0
Bra028311.1-P	Field mustard	cytosol	31.72	51.85
CDY27815	Canola	cytosol, nucleus, plastid	8.09	49.02
Zm00001d051885_P001	Maize	plasma membrane, plastid	79.94	39.71

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	EntrezGene:9266224	EMBL:AK243312	UniProt:B7FA85
ProteinID:BAS92514.1	ProteinID:EEE62511.1	InterPro:Fibrillarin	InterPro:Fibrillarin_CS	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	HAMAP:MF_00351
EnsemblPlantsGene:Os05g0176000	EnsemblPlants:Os05t0176000-01	PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566
PANTHER:PTHR10335	PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI000188B047
RefSeq:XP_015640581.1	SEG:seg	:	:	:	:

Description

Nucleolar protein 1, Mediator 36_2Similar to fibrillarin-2. (Os05t0176000-01)

Coordinates

chr5:+:4559242..4562417

Molecular Weight (calculated)

32575.2 Da

IEP (calculated)

10.808

GRAVY (calculated)

-0.407

Length

309 amino acids

Sequence
(BLAST)

001: MRPPRGRGFG RGGGGRGDGG GRGGGGGRGF GRVGDSGGRG GRGGRGGRTP RGRGGGRGGG GRGGMKGGSK VVVVPHKHDG VFIAKAKEDA LCTKNMVPGE
101: SVYGEKRISV QNEDGTKVEY RVWNPFRSKL AAAVLGGVDN IWIAPGTRVL YLGGASGTTV SHVSDIVGPT GLVYAVEFSH RSGRDLVNMA KKRTNVIPII
201: EDARHPARYR MLVGMVDVIF SDVAQPDQAR ILALNASYFL KNGGHFVISI KANCIDSTMP AEAVFASEVE KLKADQFKPS EQVTLEPFER DHACVVGGYR
301: MPKKQKGTS

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.